RNA-Puzzles

Description

knowing that the crystal structure shows a homodimer that contains two strands of the sequence. The strands hybridize with blunt ends (C-G closing base pairs).

RNA sequence (5' to 3')

CCGCCGCGCCAUGCCUGUGGCGG

Experimental structure(s)

SIwMBiQGSlrR3gSAp1OU4S6VOWBuOoe1-solutionPZ1.pdb

References

S.M. Dibrov, J. McLean and T. Hermann (2011). Structure of an RNA dimer of a regulatory element from human thymidylate synthase mRNA, Acta Cryst. D, Biological Crystallography 67: 97-104.

PDB ID:

3mei

Opening date:

19 Oct 2020, 23:24

Closing date (Human category):

19 Oct 2020, 23:24

#	Group (User)	Model(s)	Category	Clashscore	DI	INF all	INF nwc	INF stacking	INF wc	MCQ	RMSD
1	Das Group (Das )	3	Human	0.000	3.657	0.934	-	0.924	0.953	13.070	3.413
2	Das Group (Das )	4	Human	0.000	4.307	0.907	-	0.908	0.906	13.140	3.907
3	Das Group (Das )	1	Human	0.000	4.305	0.918	-	0.911	0.953	12.340	3.953
4	Major Group (Major )	1	Human	51.560	4.949	0.873	-	0.847	0.949	32.640	4.319
5	Chen Group (Chen )	1	Human	0.000	5.279	0.821	-	0.796	0.872	15.480	4.336
6	Das Group (Das )	2	Human	1.360	5.082	0.876	-	0.866	0.900	12.860	4.452
7	Das Group (Das )	5	Human	0.000	5.362	0.851	-	0.838	0.878	14.630	4.563
8	Bujnicki Group (Bujnicki )	4	Human	69.780	6.880	0.719	-	0.750	0.651	13.460	4.944
9	Bujnicki Group (Bujnicki )	5	Human	67.070	6.542	0.781	-	0.796	0.777	11.190	5.111
10	Bujnicki Group (Bujnicki )	3	Human	47.300	6.522	0.810	-	0.765	0.900	11.690	5.282
11	Bujnicki Group (Bujnicki )	1	Human	0.000	6.457	0.883	-	0.838	0.976	13.730	5.699
12	Santalucia Group (Santalucia )	1	Human	25.000	7.126	0.807	-	0.729	0.950	14.860	5.749
13	Bujnicki Group (Bujnicki )	2	Human	60.090	7.963	0.770	-	0.739	0.850	14.350	6.131
14	Dokholyan Group (Dokholyan )	1	Human	24.980	8.844	0.811	-	0.788	0.858	16.670	7.176

Group (User)

Model(s)

Category

Clashscore

INF all

INF nwc

INF stacking

INF wc

MCQ

P-Value

RMSD

Details

Das Group (Das )

Human

0.000

3.657

0.934

0.924

0.953

13.070

0.000

3.413

Das Group (Das )

Human

0.000

4.307

0.907

0.908

0.906

13.140

0.000

3.907

Das Group (Das )

Human

0.000

4.305

0.918

0.911

0.953

12.340

0.000

3.953

Major Group (Major )

Human

51.560

4.949

0.873

0.847

0.949

32.640

0.000

4.319

Chen Group (Chen )

Human

0.000

5.279

0.821

0.796

0.872

15.480

0.000

4.336

Das Group (Das )

Human

1.360

5.082

0.876

0.866

0.900

12.860

0.000

4.452

Das Group (Das )

Human

0.000

5.362

0.851

0.838

0.878

14.630

0.000

4.563

Bujnicki Group (Bujnicki )

Human

69.780

6.880

0.719

0.750

0.651

13.460

0.000

4.944

Bujnicki Group (Bujnicki )

Human

67.070

6.542

0.781

0.796

0.777

11.190

0.000

5.111

Bujnicki Group (Bujnicki )

Human

47.300

6.522

0.810

0.765

0.900

11.690

0.000

5.282

Bujnicki Group (Bujnicki )

Human

0.000

6.457

0.883

0.838

0.976

13.730

0.000

5.699

Santalucia Group (Santalucia )

Human

25.000

7.126

0.807

0.729

0.950

14.860

0.000

5.749

Bujnicki Group (Bujnicki )

Human

60.090

7.963

0.770

0.739

0.850

14.350

0.000

6.131

Dokholyan Group (Dokholyan )

Human

24.980

8.844

0.811

0.788

0.858

16.670

0.000

7.176

Metric	Webserver category	Human category
Clashscore	-	-	13.170	24.796
DI	-	-	5.909	5.948
INF all	-	-	0.836	0.840
INF nwc	-	-	0.000	0.000
INF stacking	-	-	0.817	0.821
INF wc	-	-	0.900	0.884
MCQ	-	-	13.595	15.008
P-Value	-	-	0.000	0.000
RMSD	-	-	4.754	4.931

Metric

Webserver category

Human category

Median

Mean

Median

Mean

Clashscore

13.170

24.796

5.909

5.948

INF all

0.836

0.840

INF nwc

0.000

INF stacking

0.817

0.821

INF wc

0.900

0.884

MCQ

13.595

15.008

P-Value

0.000

RMSD

4.754

4.931

Puzzle PZ1