Completed Puzzles Puzzle PZ10 Results
Description
tRNA complex
RNA sequence (5' to 3')
GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUU CGAAUCCCGUCUUCCGCUCCA
Experimental structure(s)
seICo2psKHve5ASfLzcmzfOi3TNxZYDp-solutionPZ10.pdb 2w9eZ4QPLVOaLPzxooNZtDplyV0zvLLS-solutionPZ10_1.pdb
References

J. Zhang and A. R. Ferré-DAmaré (2013) Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA. Nature 500: 363-366.

PDB ID:
4lck
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Das Group (Das ) 3 Human 13.450 8.365 0.813 0.700 0.786 0.946 26.020 0.000 6.803
2 Das Group (Das ) 4 Human 12.360 8.539 0.827 0.684 0.809 0.948 25.150 0.000 7.062
3 Das Group (Das ) 1 Human 14.180 9.199 0.824 0.700 0.811 0.920 25.840 0.000 7.580
4 Bujnicki Group (Bujnicki ) 4 Human 1.270 12.462 0.749 0.403 0.738 0.874 30.490 0.000 9.339
5 Bujnicki Group (Bujnicki ) 1 Human 1.810 12.079 0.843 0.676 0.833 0.917 30.150 0.000 10.177
6 Bujnicki Group (Bujnicki ) 8 Human 3.080 12.319 0.827 0.643 0.824 0.895 29.360 0.000 10.193
7 Bujnicki Group (Bujnicki ) 7 Human 2.540 12.821 0.799 0.540 0.797 0.883 30.390 0.000 10.248
8 Bujnicki Group (Bujnicki ) 5 Human 2.360 12.548 0.819 0.564 0.828 0.866 29.960 0.000 10.274
9 Bujnicki Group (Bujnicki ) 9 Human 1.630 12.697 0.816 0.690 0.807 0.883 30.150 0.000 10.359
10 Bujnicki Group (Bujnicki ) 6 Human 2.000 12.768 0.812 0.507 0.823 0.861 29.720 0.000 10.361
11 Bujnicki Group (Bujnicki ) 3 Human 1.450 12.603 0.823 0.564 0.817 0.914 31.590 0.000 10.375
12 Bujnicki Group (Bujnicki ) 2 Human 2.900 12.676 0.820 0.667 0.808 0.902 29.640 0.000 10.390
13 Bujnicki Group (Bujnicki ) 10 Human 1.630 12.725 0.817 0.693 0.803 0.909 32.130 0.000 10.397
14 Das Group (Das ) 5 Human 13.270 12.295 0.847 0.778 0.823 0.948 26.150 0.000 10.417
15 Das Group (Das ) 2 Human 13.640 12.588 0.830 0.778 0.803 0.929 26.190 0.000 10.447
16 Chen Group (Chen ) 1 Human 9.080 15.699 0.720 0.483 0.709 0.837 36.530 0.000 11.304
17 Dokholyan Group (Dokholyan ) 3 Human 9.980 17.464 0.716 0.101 0.710 0.880 28.600 0.000 12.496
18 Dokholyan Group (Dokholyan ) 1 Human 14.700 19.000 0.692 0.101 0.684 0.858 28.180 0.000 13.157
19 Dokholyan Group (Dokholyan ) 10 Human 15.060 19.336 0.683 0.000 0.654 0.892 30.230 0.000 13.202
20 Dokholyan Group (Dokholyan ) 4 Human 12.340 19.175 0.697 0.154 0.672 0.870 28.450 0.000 13.367
21 Dokholyan Group (Dokholyan ) 2 Human 11.610 20.661 0.672 0.120 0.632 0.892 27.960 0.000 13.889
22 Dokholyan Group (Dokholyan ) 8 Human 12.700 23.193 0.672 0.134 0.647 0.849 28.560 0.000 15.586
23 Dokholyan Group (Dokholyan ) 7 Human 8.710 24.201 0.672 0.202 0.659 0.827 27.470 0.000 16.264
24 Dokholyan Group (Dokholyan ) 9 Human 13.430 25.223 0.661 0.000 0.653 0.810 28.780 0.000 16.681
25 Dokholyan Group (Dokholyan ) 5 Human 11.790 26.520 0.632 0.000 0.592 0.840 29.120 0.000 16.750
26 Dokholyan Group (Dokholyan ) 6 Human 9.250 26.125 0.668 0.134 0.621 0.895 28.190 0.000 17.442
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 9.615 8.316
DI - - 12.747 15.895
INF all - - 0.806 0.760
INF nwc - - 0.524 0.424
INF stacking - - 0.792 0.744
INF wc - - 0.888 0.886
MCQ - - 28.950 29.038
P-Value - - 0.000 0.000
RMSD - - 10.407 11.714

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD