Completed Puzzles Puzzle PZ10tBox Results
Description
T-box riboswitch
RNA sequence (5' to 3')
UGCGAUGAGAAGAAGAGUAUUAAGGAUUUACUAUGAUUAGCGACUCUAGGAUAG UGAAAGCUAGAGGAUAGUAACCUUAAGAAGGCACUUCGAGCA
Experimental structure(s)
RNyZ4LYmExd28U9ApteLDdQK6AKr4CtT-solutionPZ10tBox.pdb zxAKKkSpujmT3kRISZNxw6bWDDqEomne-solutionPZ10tBox_1.pdb
References

J. Zhang and A. R. Ferré-DAmaré (2013) Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA. Nature 500: 363-366.

PDB ID:
4lck
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Das Group (Das ) 4 Human 12.360 7.478 0.805 0.624 0.804 0.906 25.150 0.000 6.021
2 Das Group (Das ) 3 Human 13.450 8.249 0.795 0.647 0.787 0.900 26.020 0.000 6.557
3 Das Group (Das ) 1 Human 14.180 10.271 0.800 0.647 0.808 0.861 25.840 0.000 8.217
4 Das Group (Das ) 5 Human 13.270 11.668 0.829 0.738 0.819 0.906 26.150 0.000 9.677
5 Das Group (Das ) 2 Human 13.640 12.021 0.805 0.674 0.795 0.906 26.190 0.000 9.682
6 Bujnicki Group (Bujnicki ) 4 Human 1.270 16.927 0.638 0.000 0.642 0.811 30.490 0.000 10.807
7 Bujnicki Group (Bujnicki ) 8 Human 3.080 15.182 0.786 0.556 0.793 0.852 29.360 0.001 11.940
8 Bujnicki Group (Bujnicki ) 1 Human 1.810 15.181 0.788 0.500 0.795 0.852 30.150 0.001 11.959
9 Bujnicki Group (Bujnicki ) 5 Human 2.360 15.671 0.774 0.333 0.801 0.813 29.960 0.002 12.122
10 Bujnicki Group (Bujnicki ) 7 Human 2.540 16.489 0.736 0.298 0.753 0.813 30.390 0.002 12.133
11 Bujnicki Group (Bujnicki ) 3 Human 1.450 16.008 0.761 0.378 0.771 0.859 31.590 0.002 12.185
12 Bujnicki Group (Bujnicki ) 9 Human 1.630 16.099 0.759 0.589 0.763 0.813 30.150 0.002 12.222
13 Bujnicki Group (Bujnicki ) 6 Human 2.000 16.251 0.752 0.167 0.790 0.788 29.720 0.002 12.226
14 Bujnicki Group (Bujnicki ) 10 Human 1.630 15.876 0.770 0.632 0.764 0.851 32.130 0.002 12.227
15 Bujnicki Group (Bujnicki ) 2 Human 2.900 16.014 0.765 0.504 0.768 0.843 29.640 0.002 12.254
16 Dokholyan Group (Dokholyan ) 2 Human 11.610 19.911 0.632 0.000 0.624 0.803 27.960 0.004 12.584
17 Dokholyan Group (Dokholyan ) 3 Human 9.980 19.636 0.676 0.000 0.672 0.843 28.600 0.012 13.273
18 Chen Group (Chen ) 1 Human 9.080 19.047 0.702 0.422 0.725 0.766 36.530 0.014 13.367
19 Dokholyan Group (Dokholyan ) 10 Human 15.060 21.133 0.645 0.000 0.612 0.883 30.230 0.020 13.628
20 Dokholyan Group (Dokholyan ) 8 Human 12.700 22.338 0.618 0.000 0.587 0.834 28.560 0.025 13.802
21 Dokholyan Group (Dokholyan ) 9 Human 13.430 22.872 0.609 - 0.588 0.777 28.780 0.029 13.918
22 Dokholyan Group (Dokholyan ) 4 Human 12.340 22.569 0.636 0.000 0.624 0.818 28.450 0.049 14.353
23 Dokholyan Group (Dokholyan ) 1 Human 14.700 22.218 0.658 0.000 0.664 0.803 28.180 0.065 14.609
24 Dokholyan Group (Dokholyan ) 5 Human 11.790 27.326 0.599 0.000 0.570 0.818 29.120 0.295 16.368
25 Dokholyan Group (Dokholyan ) 7 Human 8.710 26.933 0.637 0.000 0.640 0.792 27.470 0.461 17.162
26 Dokholyan Group (Dokholyan ) 6 Human 9.250 28.514 0.647 0.000 0.611 0.883 28.190 0.733 18.458
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 9.615 8.316
DI - - 16.370 17.765
INF all - - 0.744 0.716
INF nwc - - 0.316 0.297
INF stacking - - 0.758 0.714
INF wc - - 0.839 0.838
MCQ - - 28.950 29.038
P-Value - - 0.002 0.066
RMSD - - 12.227 12.375

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD