RNA-Puzzles

Completed Puzzles Puzzle PZ11 Results

Puzzle PZ11

Description

7SK

RNA sequence (5' to 3')

GGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGG CUAGGCGGGUCCC

Experimental structure(s)

0etoJ04o9dAw7ziAIMo41U91Bvbr5ZSD-solutionPZ11.pdb EclTzIX85xwV9YyP9E3AHc78wbM07H1u-solutionPZ11_1.pdb AcibFMChNjThMTSvWSqIrwvFe07WQUtI-solutionPZ11_NMR.pdb

References

D. Martinez-Zapien, P. Legrand, A. G. McEwen, F. Proux, T. Cragnolini, S. Pasquali and A. C. Dock-Bregeon (2017) The crystal structure of the 5΄ functional domain of the transcription riboregulator 7SK. Nucleic Acids Res. 45(6): 3568-3579.
S. Bourbigot, A. C. Dock-Bregeon, P. Eberling, J. Coutant, B. Kieffer and I. Lebars (2016) Solution structure of the 5-terminal hairpin of the 7SK small nuclear RNA. RNA. 2016 22(12): 1844-1858.

PDB ID:

5lys

Opening date:

19 Oct 2020, 23:24

Closing date (Human category):

19 Oct 2020, 23:24

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#	Group (User)	Model(s)	Clashscore	DI	INF all	INF nwc	INF stacking	INF wc	MCQ	P-Value	RMSD
1	Chen Group (Chen )	5	0.550	6.166	0.809	0.000	0.821	0.953	24.290	0.000	4.989
2	Chen Group (Chen )	4	0.550	6.616	0.794	-	0.772	0.955	28.150	0.001	5.255
3	Chen Group (Chen )	2	2.740	6.640	0.808	0.000	0.793	0.977	25.420	0.001	5.362
4	Bujnicki Group (Bujnicki )	3	0.000	7.446	0.759	0.000	0.734	0.978	25.330	0.002	5.649
5	Szachniuk Group (formerly: Adamiak Group) (Adamiak )	7	7.140	7.641	0.766	0.000	0.720	1.000	25.970	0.002	5.856
6	Bujnicki Group (Bujnicki )	4	2.780	8.023	0.740	0.000	0.678	1.000	30.460	0.003	5.940
7	Bujnicki Group (Bujnicki )	1	0.550	7.853	0.762	0.000	0.732	0.957	22.640	0.003	5.983
8	Chen Group (Chen )	1	1.100	7.587	0.794	0.000	0.787	0.953	26.350	0.003	6.026
9	Ding Group (Ding )	5	12.620	9.395	0.676	-	0.672	0.798	27.270	0.005	6.348
10	Szachniuk Group (formerly: Adamiak Group) (Adamiak )	5	6.590	8.373	0.768	0.000	0.739	0.977	25.060	0.006	6.434

Showing 1 to 10 of 53 entries

Metric	Webserver category		Human category
Metric	Median	Mean	Median	Mean
Clashscore	-	-	8.780	7.362
DI	-	-	11.071	11.401
INF all	-	-	0.740	0.731
INF nwc	-	-	0.000	0.011
INF stacking	-	-	0.734	0.733
INF wc	-	-	0.879	0.873
MCQ	-	-	24.910	24.453
P-Value	-	-	0.048	0.141
RMSD	-	-	7.969	8.254

Result visualization for different evaluation measures

Clashscore

INF all

INF nwc

INF stacking

INF wc

P-Value

RMSD