Completed Puzzles Puzzle PZ11 Results
Description
7SK
RNA sequence (5' to 3')
GGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGG CUAGGCGGGUCCC
Experimental structure(s)
0etoJ04o9dAw7ziAIMo41U91Bvbr5ZSD-solutionPZ11.pdb EclTzIX85xwV9YyP9E3AHc78wbM07H1u-solutionPZ11_1.pdb AcibFMChNjThMTSvWSqIrwvFe07WQUtI-solutionPZ11_NMR.pdb
References

D. Martinez-Zapien, P. Legrand, A. G. McEwen, F. Proux, T. Cragnolini, S. Pasquali and A. C. Dock-Bregeon (2017) The crystal structure of the 5΄ functional domain of the transcription riboregulator 7SK. Nucleic Acids Res. 45(6): 3568-3579.
S. Bourbigot, A. C. Dock-Bregeon, P. Eberling, J. Coutant, B. Kieffer and I. Lebars (2016) Solution structure of the 5-terminal hairpin of the 7SK small nuclear RNA. RNA. 2016 22(12): 1844-1858.

PDB ID:
5lys
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Chen Group (Chen ) 5 Human 0.550 6.166 0.809 0.000 0.821 0.953 24.290 0.000 4.989
2 Chen Group (Chen ) 4 Human 0.550 6.616 0.794 - 0.772 0.955 28.150 0.001 5.255
3 Chen Group (Chen ) 2 Human 2.740 6.640 0.808 0.000 0.793 0.977 25.420 0.001 5.362
4 Bujnicki Group (Bujnicki ) 3 Human 0.000 7.446 0.759 0.000 0.734 0.978 25.330 0.002 5.649
5 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 7 Human 7.140 7.641 0.766 0.000 0.720 1.000 25.970 0.002 5.856
6 Bujnicki Group (Bujnicki ) 4 Human 2.780 8.023 0.740 0.000 0.678 1.000 30.460 0.003 5.940
7 Bujnicki Group (Bujnicki ) 1 Human 0.550 7.853 0.762 0.000 0.732 0.957 22.640 0.003 5.983
8 Chen Group (Chen ) 1 Human 1.100 7.587 0.794 0.000 0.787 0.953 26.350 0.003 6.026
9 Ding Group (Ding ) 5 Human 12.620 9.395 0.676 - 0.672 0.798 27.270 0.005 6.348
10 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Human 6.590 8.373 0.768 0.000 0.739 0.977 25.060 0.006 6.434
11 Ding Group (Ding ) 9 Human 9.870 9.588 0.704 0.000 0.719 0.827 26.100 0.010 6.748
12 Das Group (Das ) 10 Human 10.420 8.884 0.773 0.000 0.779 0.977 22.900 0.012 6.866
13 Ding Group (Ding ) 10 Human 13.710 9.855 0.698 0.000 0.750 0.771 24.360 0.012 6.878
14 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 8.240 9.764 0.716 0.000 0.758 0.763 24.910 0.014 6.992
15 Ding Group (Ding ) 3 Human 13.170 9.189 0.761 - 0.731 0.929 25.750 0.014 6.996
16 Chen Group (Chen ) 3 Human 1.100 8.918 0.791 0.000 0.793 0.929 26.740 0.015 7.050
17 Bujnicki Group (Bujnicki ) 8 Human 0.000 10.927 0.654 - 0.683 0.696 22.150 0.017 7.142
18 Ding Group (Ding ) 8 Human 9.870 9.744 0.751 0.000 0.772 0.853 25.220 0.022 7.315
19 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 6 Human 10.980 10.326 0.710 0.000 0.694 0.906 25.770 0.022 7.333
20 Bujnicki Group (Bujnicki ) 9 Human 1.100 9.776 0.755 - 0.711 0.957 23.870 0.024 7.385
21 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 10 Human 9.340 11.111 0.667 0.000 0.682 0.756 28.030 0.024 7.407
22 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 6.590 11.166 0.664 0.000 0.709 0.727 25.440 0.024 7.409
23 Bujnicki Group (Bujnicki ) 10 Human 0.000 11.801 0.639 0.000 0.690 0.651 26.160 0.029 7.546
24 Bujnicki Group (Bujnicki ) 5 Human 0.000 10.919 0.694 - 0.718 0.756 22.220 0.030 7.574
25 Ding Group (Ding ) 4 Human 9.870 10.869 0.721 0.000 0.761 0.800 24.890 0.041 7.838
26 Chen Group (Chen ) 9 Human 14.800 10.379 0.766 0.000 0.736 0.978 21.410 0.048 7.955
27 Das Group (Das ) 7 Human 9.330 10.825 0.736 0.000 0.736 0.914 21.660 0.048 7.969
28 Das Group (Das ) 5 Human 10.970 12.316 0.672 0.000 0.683 0.818 22.560 0.068 8.277
29 Das Group (Das ) 2 Human 12.070 11.133 0.750 0.000 0.759 0.955 20.210 0.074 8.351
30 Chen Group (Chen ) 6 Human 17.550 11.071 0.755 0.000 0.748 0.914 19.240 0.074 8.358
31 Ding Group (Ding ) 1 Human 11.520 12.177 0.695 - 0.682 0.827 26.220 0.083 8.465
32 Das Group (Das ) 4 Human 10.420 10.425 0.813 0.169 0.807 1.000 21.610 0.084 8.475
33 Chen Group (Chen ) 8 Human 9.870 10.885 0.781 0.000 0.768 0.978 21.820 0.086 8.498
34 Das Group (Das ) 1 Human 8.230 11.467 0.744 0.000 0.739 0.934 20.810 0.088 8.526
35 Ding Group (Ding ) 7 Human 14.260 11.173 0.765 0.000 0.779 0.879 24.520 0.090 8.542
36 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 9 Human 10.980 12.117 0.713 0.000 0.768 0.773 25.240 0.099 8.645
37 Das Group (Das ) 6 Human 8.780 12.679 0.695 0.000 0.691 0.889 23.890 0.117 8.818
38 Xiao Group (Xiao ) 2 Human 1.100 12.064 0.732 - 0.721 0.864 28.550 0.118 8.825
39 Das Group (Das ) 3 Human 8.780 11.832 0.752 0.000 0.748 1.000 21.500 0.126 8.901
40 Bujnicki Group (Bujnicki ) 6 Human 0.550 13.030 0.694 0.000 0.740 0.725 22.750 0.143 9.042
41 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 9.880 13.382 0.676 0.000 0.678 0.810 26.300 0.144 9.049
42 Bujnicki Group (Bujnicki ) 7 Human 1.100 13.542 0.680 - 0.698 0.756 22.050 0.166 9.212
43 Chen Group (Chen ) 7 Human 12.610 12.180 0.764 0.218 0.727 0.957 21.080 0.179 9.305
44 Chen Group (Chen ) 10 Human 8.230 12.496 0.758 0.000 0.730 0.957 20.680 0.204 9.470
45 Xiao Group (Xiao ) 3 Human 1.100 14.518 0.711 0.000 0.715 0.864 26.600 0.363 10.327
46 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 8 Human 9.340 15.452 0.673 0.000 0.682 0.810 25.370 0.376 10.392
47 Das Group (Das ) 8 Human 7.680 13.673 0.767 0.000 0.758 0.934 20.830 0.396 10.484
48 Ding Group (Ding ) 6 Human 10.970 13.713 0.768 0.000 0.797 0.854 24.390 0.407 10.538
49 Xiao Group (Xiao ) 1 Human 4.400 15.058 0.710 0.000 0.742 0.791 29.740 0.440 10.686
50 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 10.430 16.320 0.685 - 0.663 0.831 22.520 0.548 11.177
51 Ding Group (Ding ) 2 Human 14.260 15.173 0.754 0.000 0.773 0.854 25.640 0.605 11.439
52 Bujnicki Group (Bujnicki ) 2 Human 0.000 23.854 0.644 0.189 0.691 0.667 25.080 0.993 15.356
53 Das Group (Das ) 9 Human 12.070 22.744 0.707 0.000 0.698 0.864 28.270 0.998 16.079
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 8.780 7.362
DI - - 11.071 11.401
INF all - - 0.740 0.731
INF nwc - - 0.000 0.011
INF stacking - - 0.734 0.733
INF wc - - 0.879 0.873
MCQ - - 24.910 24.453
P-Value - - 0.048 0.141
RMSD - - 7.969 8.254

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD