Completed Puzzles Puzzle PZ12 Results
Description
ydaO riboswitch.
RNA sequence (5' to 3')
AUCGCUGAACGCGGGGGACCCAGGGGGCGAAUCUCUUCCGAAAGGAAGAGUAGG GUUACUCCUUCGACCCGAGCCCGUCAGCUAACCUCGCAAGCGUCCGAAGGAGAA AAA
Experimental structure(s)
if4sSNmvPfzvaBh1D6IxHvr2QmfVQHUO-solutionPZ12.pdb
References

A. Ren, D. J. Patel (2014) c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets. Nat Chem Biol. 10(9): 780-6.

PDB ID:
4qlm
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Ding Group (Ding ) 12 Human 12.610 14.453 0.696 0.000 0.663 0.861 25.660 0.000 10.061
2 Ding Group (Ding ) 11 Human 11.380 14.550 0.714 0.000 0.689 0.849 24.320 0.000 10.387
3 Bujnicki Group (Bujnicki ) 8 Human 33.140 14.891 0.707 0.144 0.691 0.849 22.750 0.000 10.525
4 Das Group (Das ) 7 Human 16.520 15.330 0.725 0.535 0.660 0.901 28.830 0.000 11.112
5 Bujnicki Group (Bujnicki ) 3 Human 27.940 15.261 0.749 0.250 0.747 0.870 22.080 0.000 11.431
6 Bujnicki Group (Bujnicki ) 10 Human 27.940 16.560 0.722 0.177 0.711 0.854 24.230 0.000 11.961
7 Bujnicki Group (Bujnicki ) 5 Human 28.190 16.893 0.723 0.177 0.695 0.877 23.940 0.000 12.212
8 Das Group (Das ) 8 Human 2.970 17.590 0.729 0.267 0.704 0.877 24.530 0.000 12.820
9 Das Group (Das ) 2 Human 11.730 17.247 0.744 0.401 0.691 0.930 25.840 0.000 12.827
10 Das Group (Das ) 5 Human 10.540 17.869 0.723 0.267 0.684 0.901 26.870 0.000 12.919
11 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 9.150 19.410 0.667 0.177 0.593 0.901 24.760 0.000 12.938
12 Das Group (Das ) 6 Human 11.020 18.506 0.702 0.250 0.665 0.877 29.210 0.000 12.984
13 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 7.920 19.604 0.680 0.250 0.606 0.899 25.230 0.000 13.326
14 Ding Group (Ding ) 8 Human 13.850 20.052 0.666 0.000 0.627 0.857 25.410 0.000 13.363
15 Bujnicki Group (Bujnicki ) 7 Human 18.550 18.794 0.713 0.158 0.728 0.778 22.070 0.000 13.393
16 Bujnicki Group (Bujnicki ) 9 Human 25.720 18.849 0.712 0.000 0.740 0.789 23.150 0.000 13.421
17 Das Group (Das ) 9 Human 3.460 18.091 0.744 0.204 0.730 0.854 24.510 0.000 13.455
18 Ding Group (Ding ) 1 Human 14.840 19.652 0.689 0.000 0.658 0.857 25.640 0.000 13.534
19 Das Group (Das ) 3 Human 13.170 19.276 0.711 0.335 0.672 0.889 28.640 0.000 13.707
20 Das Group (Das ) 1 Human 10.060 19.104 0.728 0.401 0.677 0.901 25.590 0.000 13.907
21 Bujnicki Group (Bujnicki ) 4 Human 22.010 19.620 0.716 0.204 0.703 0.829 22.770 0.000 14.039
22 Ding Group (Ding ) 4 Human 13.110 20.877 0.673 0.000 0.630 0.861 25.750 0.000 14.051
23 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 10.140 20.385 0.705 0.204 0.656 0.886 28.740 0.000 14.372
24 Bujnicki Group (Bujnicki ) 6 Human 21.510 21.537 0.673 0.000 0.685 0.812 23.760 0.000 14.487
25 Ding Group (Ding ) 9 Human 12.860 21.944 0.664 0.000 0.625 0.845 26.460 0.000 14.576
26 Ding Group (Ding ) 6 Human 15.330 23.011 0.670 0.000 0.615 0.873 24.920 0.000 15.412
27 Chen Group (Chen ) 4 Human 1.730 24.884 0.645 0.134 0.593 0.870 26.440 0.000 16.055
28 Das Group (Das ) 10 Human 3.220 22.754 0.733 0.612 0.677 0.877 24.980 0.000 16.688
29 Ding Group (Ding ) 3 Human 16.330 25.094 0.693 0.250 0.648 0.849 24.110 0.000 17.387
30 Ding Group (Ding ) 7 Human 10.140 24.830 0.706 0.000 0.682 0.873 25.140 0.000 17.524
31 Bujnicki Group (Bujnicki ) 2 Human 11.130 26.096 0.680 0.177 0.647 0.833 35.230 0.000 17.743
32 Chen Group (Chen ) 8 Human 9.640 26.573 0.676 0.177 0.642 0.833 26.680 0.000 17.967
33 Das Group (Das ) 4 Human 11.490 25.031 0.720 0.267 0.679 0.901 25.970 0.000 18.013
34 Chen Group (Chen ) 9 Human 11.130 27.288 0.669 0.144 0.620 0.884 26.390 0.000 18.254
35 Chen Group (Chen ) 2 Human 0.490 28.424 0.653 0.204 0.603 0.833 29.790 0.000 18.573
36 Ding Group (Ding ) 10 Human 12.120 26.676 0.703 0.000 0.677 0.873 24.340 0.000 18.756
37 Chen Group (Chen ) 3 Human 0.490 29.804 0.645 0.000 0.607 0.833 25.970 0.000 19.230
38 Chen Group (Chen ) 10 Human 13.600 30.005 0.645 0.000 0.611 0.833 26.410 0.000 19.359
39 Chen Group (Chen ) 5 Human 2.470 29.764 0.654 0.134 0.611 0.857 26.580 0.000 19.469
40 Chen Group (Chen ) 6 Human 2.970 30.012 0.651 0.000 0.607 0.857 26.570 0.000 19.541
41 Weeks Group (Kevin ) 3 Human 8.160 31.833 0.621 0.000 0.554 0.870 27.190 0.000 19.760
42 Weeks Group (Kevin ) 2 Human 9.640 29.616 0.676 0.000 0.682 0.784 25.220 0.000 20.024
43 Chen Group (Chen ) 7 Human 2.230 29.728 0.674 0.177 0.624 0.870 25.660 0.000 20.050
44 Bujnicki Group (Bujnicki ) 1 Human 25.220 29.022 0.700 0.474 0.675 0.808 25.280 0.000 20.312
45 Weeks Group (Kevin ) 1 Human 6.680 32.690 0.625 0.000 0.593 0.795 23.770 0.000 20.444
46 Chen Group (Chen ) 1 Human 0.000 29.936 0.685 0.354 0.633 0.857 29.190 0.000 20.493
47 Xiao Group (Xiao ) 1 Human 45.060 80.031 0.369 0.158 0.452 0.225 34.160 0.217 29.533
48 Xiao Group (Xiao ) 2 Human 50.470 80.180 0.369 0.204 0.449 0.225 33.300 0.221 29.559
49 Xiao Group (Xiao ) 3 Human 19.810 72.339 0.505 0.204 0.535 0.490 36.500 0.999 36.556
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 11.490 13.875
DI - - 21.944 25.958
INF all - - 0.689 0.674
INF nwc - - 0.177 0.165
INF stacking - - 0.658 0.646
INF wc - - 0.857 0.825
MCQ - - 25.660 26.337
P-Value - - 0.000 0.029
RMSD - - 14.576 16.500

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD