Completed Puzzles Puzzle PZ13 Results
Description
ZMP Riboswitch.
RNA sequence (5' to 3')
GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCCGGCAUCGA UAGCCGCCCGCCUGGGC
Experimental structure(s)
9ZqzJGsScKWu3naei1tPVvHfOeK9IQra-solutionPZ13.pdb O8sOpzrwjrkrLwX9UcGkF4tJSxXEgMvc-solutionPZ13_1.pdb 9TfTMgKGCVRaabcaKXePN92HcEpD9HCE-solutionPZ13_2.pdb
References

J. J. Trausch, J. G. Marcano-Velázquez, M. M. Matyjasik and R. T. Batey (2015) Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch. Chem Biol. 22(7): 829-37.

PDB ID:
4xw7
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Das Group (Das ) 7 Human 10.850 7.032 0.769 0.258 0.755 0.905 21.560 0.000 5.410
2 Das Group (Das ) 2 Human 4.340 7.112 0.781 0.218 0.779 0.927 18.640 0.000 5.553
3 Chen Group (Chen ) 5 Human 0.430 8.107 0.808 0.000 0.778 0.951 29.690 0.000 6.547
4 Das Group (Das ) 1 Human 5.210 9.702 0.741 0.000 0.749 0.865 19.970 0.000 7.193
5 Bujnicki Group (Bujinicki ) 3 Human 22.130 11.054 0.758 0.000 0.762 0.819 21.650 0.000 8.377
6 Das Group (Das ) 3 Human 6.070 11.838 0.749 0.258 0.714 0.927 24.080 0.000 8.870
7 Bujnicki Group (Bujinicki ) 1 Human 37.380 11.137 0.806 0.000 0.831 0.865 21.550 0.000 8.972
8 Chen Group (Chen ) 2 Human 0.430 12.107 0.779 0.000 0.755 0.927 33.230 0.000 9.434
9 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 6.080 12.430 0.762 0.000 0.709 0.951 24.930 0.000 9.470
10 Chen Group (Chen ) 3 Human 1.740 11.928 0.806 0.000 0.775 0.951 25.740 0.000 9.616
11 Das Group (Das ) 4 Human 8.680 15.286 0.720 0.000 0.692 0.884 20.590 0.000 11.011
12 Das Group (Das ) 10 Human 5.640 15.519 0.766 0.000 0.781 0.905 20.990 0.000 11.894
13 Bujnicki Group (Bujinicki ) 5 Human 9.110 16.523 0.724 0.000 0.689 0.884 18.810 0.000 11.960
14 Das Group (Das ) 5 Human 15.180 16.376 0.738 0.174 0.754 0.905 24.310 0.000 12.092
15 Das Group (Das ) 9 Human 11.710 17.157 0.707 0.000 0.643 0.905 25.480 0.000 12.129
16 Bujnicki Group (Bujinicki ) 8 Human 1.740 16.072 0.778 - 0.784 0.819 18.080 0.000 12.502
17 Bujnicki Group (Bujinicki ) 7 Human 12.150 16.516 0.775 - 0.749 0.884 18.980 0.000 12.807
18 Das Group (Das ) 8 Human 4.770 17.230 0.764 0.408 0.736 0.865 21.470 0.000 13.156
19 Ding Group (Ding ) 3 Human 13.020 18.078 0.747 0.000 0.708 0.905 20.430 0.000 13.500
20 Bujnicki Group (Bujinicki ) 2 Human 20.390 17.754 0.775 0.000 0.775 0.865 20.940 0.000 13.759
21 Ding Group (Ding ) 4 Human 10.410 18.553 0.761 0.000 0.719 0.927 20.190 0.000 14.114
22 Das Group (Das ) 6 Human 8.680 20.190 0.713 0.000 0.667 0.930 24.380 0.000 14.405
23 Chen Group (Chen ) 8 Human 2.170 17.929 0.805 0.000 0.799 0.900 23.770 0.000 14.430
24 Bujnicki Group (Bujinicki ) 4 Human 41.250 18.854 0.772 0.000 0.755 0.884 20.430 0.000 14.564
25 Ding Group (Ding ) 8 Human 6.940 19.289 0.758 0.000 0.732 0.927 20.960 0.000 14.623
26 Ding Group (Ding ) 6 Human 12.150 19.613 0.752 0.000 0.727 0.878 20.070 0.000 14.750
27 Chen Group (Chen ) 1 Human 0.000 19.762 0.747 0.000 0.708 0.927 29.750 0.000 14.758
28 Bujnicki Group (Bujinicki ) 10 Human 3.040 26.518 0.560 - 0.660 0.393 20.760 0.000 14.839
29 Ding Group (Ding ) 5 Human 13.020 19.970 0.749 0.000 0.700 0.927 20.800 0.000 14.963
30 Chen Group (Chen ) 7 Human 0.430 19.588 0.765 0.000 0.724 0.926 31.250 0.000 14.975
31 Chen Group (Chen ) 4 Human 0.000 21.678 0.695 0.000 0.701 0.781 29.620 0.000 15.056
32 Bujnicki Group (Bujinicki ) 6 Human 6.510 20.431 0.744 - 0.724 0.837 18.290 0.000 15.191
33 Chen Group (Chen ) 9 Human 0.430 19.385 0.786 0.000 0.811 0.874 28.510 0.000 15.231
34 Dokholyan Group (Dokholyan ) 2 Human 10.410 22.828 0.667 0.000 0.653 0.765 21.390 0.000 15.231
35 Chen Group (Chen ) 6 Human 0.000 19.903 0.800 0.408 0.796 0.868 23.970 0.001 15.923
36 Ding Group (Ding ) 1 Human 13.450 19.349 0.836 0.000 0.831 0.927 20.530 0.001 16.168
37 Ding Group (Ding ) 7 Human 18.220 20.661 0.788 0.000 0.759 0.927 21.790 0.002 16.276
38 Ding Group (Ding ) 2 Human 19.090 21.127 0.775 0.000 0.762 0.878 19.980 0.002 16.382
39 Dokholyan Group (Dokholyan ) 1 Human 13.880 25.918 0.635 0.000 0.618 0.800 25.190 0.002 16.453
40 Dokholyan Group (Dokholyan ) 5 Human 14.750 27.540 0.606 0.000 0.579 0.765 26.400 0.003 16.686
41 Xiao Group (Xiao ) 1 Human 1.330 38.858 0.430 0.000 0.493 0.345 26.940 0.003 16.723
42 Ding Group (Ding ) 10 Human 11.280 23.016 0.729 0.000 0.681 0.901 21.000 0.004 16.770
43 Bujnicki Group (Bujinicki ) 9 Human 1.740 31.497 0.539 - 0.655 0.333 24.170 0.005 16.992
44 Ding Group (Ding ) 9 Human 10.850 22.895 0.752 - 0.714 0.884 20.540 0.008 17.218
45 Xiao Group (Xiao ) 3 Human 15.420 107.471 0.161 0.000 0.218 0.000 35.090 0.008 17.268
46 Xiao Group (Xiao ) 5 Human 26.480 27.355 0.733 0.667 0.712 0.800 28.800 0.196 20.052
47 Dokholyan Group (Dokholyan ) 4 Human 13.450 42.692 0.501 0.000 0.629 0.336 23.830 0.455 21.391
48 Dokholyan Group (Dokholyan ) 3 Human 11.280 47.415 0.482 0.000 0.595 0.303 22.250 0.760 22.869
49 Xiao Group (Xiao ) 6 Human 1.740 48.072 0.503 0.000 0.590 0.336 32.540 0.925 24.182
50 Xiao Group (Xiao ) 10 Human 1.300 46.749 0.518 0.000 0.641 0.294 35.190 0.927 24.208
51 Xiao Group (Xiao ) 2 Human 27.770 107.175 0.228 0.000 0.302 0.000 30.910 0.940 24.392
52 Xiao Group (Xiao ) 4 Human 0.000 53.902 0.453 0.000 0.539 0.294 25.540 0.942 24.422
53 Xiao Group (Xiao ) 9 Human 2.170 48.835 0.506 0.000 0.594 0.324 31.270 0.959 24.717
54 Xiao Group (Xiao ) 8 Human 1.300 51.017 0.493 0.000 0.593 0.286 31.390 0.976 25.154
55 Xiao Group (Xiao ) 7 Human 32.160 62.160 0.444 0.000 0.557 0.282 31.580 1.000 27.591
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 8.680 10.003
DI - - 19.613 26.312
INF all - - 0.747 0.681
INF nwc - - 0.000 0.043
INF stacking - - 0.714 0.688
INF wc - - 0.878 0.739
MCQ - - 23.770 24.367
P-Value - - 0.000 0.148
RMSD - - 14.839 15.149

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD