RNA-Puzzles

Description

L-glutamine riboswitch. Predict Bound forms.

RNA sequence (5' to 3')

CGUUGACCCAGGAAACUGGGCGGAAGUAAGGCCCAUUGCACUCCGGGCCUGAAG CAACGCG

Experimental structure(s)

hrsb0hV6f65WrQ7b52wRSYvK3BDypx5R-solutionPZ14Bound.pdb rBnoh3Q7GHy1mi0TRJS5ZbLftl148L6x-solutionPZ14Bound_1.pdb BFFE5hAWv8ZhVpTHSFqxS1cMxwXQdIMI-solutionPZ14Bound_2.pdb YmVJ5D6PAcgEpgJGAVcXBBSiypKA0Ncc-solutionPZ14Bound_3.pdb p79iCtsFXXoGFKcXnP3WpBDcD7aWvj9A-solutionPZ14Bound_4.pdb tp9CFuqGOYxzbOGLSaQYQa7Cvhsfw5qT-solutionPZ14Bound_5.pdb

References

A. Ren, Y. Xue, A. Peselis, A. Serganov, H. M. Al-Hashimi and D. J. Patel (2015) Structural and Dynamic Basis for Low-Affinity, High- Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Rep. 13(9): 1800-1813

PDB ID:

5ddo

Opening date:

01 Aug 2015, 23:24

Closing date (Human category):

31 Aug 2015, 23:24

#	Group (User)	Model(s)	Clashscore	DI	INF all	INF nwc	INF stacking	INF wc	MCQ	RMSD
1	Bujnicki Group (BujnickiPreExp )	2	9.120	6.226	0.802	0.667	0.767	0.968	22.710	4.994
2	Bujnicki Group (BujnickiPreExp )	1	8.110	7.190	0.788	0.596	0.741	1.000	20.890	5.665
3	Bujnicki Group (BujnickiPreExp )	4	11.180	7.926	0.742	0.577	0.701	0.918	19.530	5.879
4	Bujnicki Group (BujnickiPreExp )	3	8.610	8.448	0.797	0.596	0.756	1.000	21.950	6.731
5	Das Group (DasPreExp )	6	11.650	8.902	0.814	0.722	0.801	0.894	22.660	7.249
6	Bujnicki Group (BujnickiPreExp )	5	0.000	9.779	0.766	0.632	0.739	0.894	20.970	7.491
7	Chen Group (ChenPostExp )	6	0.000	10.945	0.692	0.333	0.645	0.968	22.520	7.570
8	Chen Group (ChenPostExp )	2	0.000	10.567	0.723	0.250	0.701	0.938	23.800	7.641
9	Das Group (DasPreExp )	9	6.080	9.516	0.809	0.722	0.792	0.894	19.580	7.694
10	Chen Group (ChenPostExp )	5	0.510	11.492	0.701	0.333	0.660	0.968	22.950	8.059

Group (User)

Model(s)

Clashscore

INF all

INF nwc

INF stacking

INF wc

MCQ

P-Value

RMSD

Details

Bujnicki Group (BujnickiPreExp )

9.120

6.226

0.802

0.667

0.767

0.968

22.710

0.000

4.994

Bujnicki Group (BujnickiPreExp )

8.110

7.190

0.788

0.596

0.741

1.000

20.890

0.000

5.665

Bujnicki Group (BujnickiPreExp )

11.180

7.926

0.742

0.577

0.701

0.918

19.530

0.000

5.879

Bujnicki Group (BujnickiPreExp )

8.610

8.448

0.797

0.596

0.756

1.000

21.950

0.000

6.731

Das Group (DasPreExp )

11.650

8.902

0.814

0.722

0.801

0.894

22.660

0.000

7.249

Bujnicki Group (BujnickiPreExp )

0.000

9.779

0.766

0.632

0.739

0.894

20.970

0.000

7.491

Chen Group (ChenPostExp )

0.000

10.945

0.692

0.333

0.645

0.968

22.520

0.000

7.570

Chen Group (ChenPostExp )

0.000

10.567

0.723

0.250

0.701

0.938

23.800

0.000

7.641

Das Group (DasPreExp )

6.080

9.516

0.809

0.722

0.792

0.894

19.580

0.000

7.694

Chen Group (ChenPostExp )

0.510

11.492

0.701

0.333

0.660

0.968

22.950

0.000

8.059

Metric	Webserver category	Human category
Clashscore	-	-	8.110	9.098
DI	-	-	16.606	15.849
INF all	-	-	0.757	0.738
INF nwc	-	-	0.577	0.437
INF stacking	-	-	0.722	0.707
INF wc	-	-	0.938	0.934
MCQ	-	-	21.885	21.860
P-Value	-	-	0.000	0.000
RMSD	-	-	11.636	11.542

Metric

Webserver category

Human category

Median

Mean

Median

Mean

Clashscore

8.110

9.098

16.606

15.849

INF all

0.757

0.738

INF nwc

0.577

0.437

INF stacking

0.722

0.707

INF wc

0.938

0.934

MCQ

21.885

21.860

P-Value

0.000

RMSD

11.636

11.542

Puzzle PZ14Bound