Completed Puzzles Puzzle PZ15 Results
Description
Hammerhead Ribozyme. Predict as 2 chains.
RNA sequence (5' to 3')
GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA- GGGCGUCUGGGCAGUACCCA
Experimental structure(s)
ckRkFvg1JqdkfjwWMZHr0G0nNQCFJafB-solutionPZ15.pdb
References

A. Mir and B. L. Golden (2016) Two Active Site Divalent Ions in the Crystal Structure of the Hammerhead Ribozyme Bound to a Transition State Analogue. Biochemistry 55(4): 633–636

PDB ID:
5di4
Opening date:
31 Aug 2015, 23:24
Closing date (Human category):
30 Sep 2015, 23:24
Closing date (Webserver category):
02 Sep 2015, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 8 Human 11.850 8.624 0.748 0.447 0.753 0.825 15.350 0.000 6.454
2 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 10 Human 7.750 8.759 0.751 0.000 0.777 0.825 15.140 0.000 6.580
3 Bujnicki Group (Bujnicki ) 1 Server 94.720 10.410 0.684 0.224 0.710 0.728 20.620 0.000 7.121
4 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 9 Human 11.850 10.624 0.731 - 0.732 0.842 16.160 0.000 7.769
5 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 5.930 9.555 0.846 0.516 0.879 0.842 13.640 0.000 8.088
6 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 5.930 9.555 0.846 0.516 0.879 0.842 13.640 0.000 8.088
7 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 5.470 10.300 0.810 0.447 0.836 0.842 14.050 0.000 8.348
8 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 5.470 10.300 0.810 0.447 0.836 0.842 14.050 0.000 8.348
9 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 7 Human 10.030 11.161 0.757 - 0.774 0.825 18.320 0.000 8.449
10 Chen Group (Chen ) 6 Human 0.460 12.002 0.709 0.316 0.698 0.827 22.940 0.000 8.514
11 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Human 9.570 11.584 0.740 - 0.751 0.825 17.610 0.000 8.576
12 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 9.570 11.584 0.740 - 0.751 0.825 17.610 0.000 8.576
13 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 10.480 11.714 0.740 0.000 0.751 0.842 16.670 0.000 8.673
14 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 10.480 11.714 0.740 0.000 0.751 0.842 16.670 0.000 8.673
15 Chen Group (Chen ) 3 Human 0.450 11.154 0.784 0.671 0.778 0.842 17.570 0.000 8.748
16 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 6 Human 10.480 11.459 0.773 0.000 0.805 0.842 19.000 0.000 8.863
17 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 26.890 13.401 0.672 0.000 0.677 0.809 16.540 0.000 9.005
18 Bujnicki Group (Bujnicki ) 7 Server 81.090 14.486 0.645 0.316 0.616 0.792 21.430 0.000 9.340
19 Chen Group (Chen ) 10 Human 0.910 13.349 0.701 0.447 0.718 0.724 23.350 0.000 9.354
20 Chen Group (Chen ) 1 Human 0.450 12.882 0.733 0.316 0.751 0.776 19.930 0.000 9.448
21 Chen Group (Chen ) 4 Human 0.000 13.410 0.752 0.632 0.746 0.809 24.740 0.000 10.082
22 Das Group (Das ) 4 Server 12.740 15.237 0.667 0.000 0.686 0.761 22.970 0.000 10.162
23 Das Group (Das ) 5 Server 9.550 16.436 0.663 0.224 0.660 0.776 18.160 0.000 10.893
24 Chen Group (Chen ) 7 Human 3.640 16.519 0.674 - 0.680 0.759 20.450 0.000 11.132
25 Das Group (Das ) 5 Server 1.820 15.950 0.705 0.258 0.710 0.792 18.420 0.000 11.251
26 Bujnicki Group (Bujnicki ) 4 Server 63.210 16.593 0.685 0.258 0.675 0.809 21.320 0.000 11.361
27 Das Group (Das ) 1 Server 10.460 16.925 0.714 0.258 0.736 0.761 16.410 0.000 12.080
28 Chen Group (Chen ) 8 Human 1.360 18.384 0.658 0.316 0.648 0.759 26.960 0.000 12.098
29 Das Group (Das ) 8 Server 5.000 20.142 0.663 0.258 0.660 0.761 19.840 0.000 13.349
30 Chen Group (Chen ) 9 Human 0.910 20.614 0.652 0.447 0.624 0.779 31.790 0.000 13.432
31 Das Group (Das ) 4 Server 5.460 21.017 0.642 0.000 0.667 0.747 18.740 0.000 13.496
32 Das Group (Das ) 9 Server 7.280 19.672 0.688 0.000 0.710 0.776 17.190 0.000 13.540
33 Das Group (Das ) 7 Server 10.460 21.066 0.649 0.000 0.661 0.747 19.520 0.000 13.680
34 Bujnicki Group (Bujnicki ) 9 Server 84.580 20.113 0.688 0.200 0.698 0.792 21.480 0.000 13.842
35 Das Group (Das ) 7 Server 4.090 20.785 0.667 0.000 0.673 0.792 15.920 0.000 13.861
36 Das Group (Das ) 3 Server 5.460 20.662 0.688 0.169 0.719 0.776 17.730 0.000 14.221
37 Bujnicki Group (Bujnicki ) 1 Server 38.250 21.118 0.710 0.200 0.731 0.792 22.460 0.000 14.990
38 Chen Group (Chen ) 2 Human 0.000 22.529 0.697 0.258 0.692 0.809 19.070 0.000 15.701
39 Chen Group (Chen ) 5 Human 0.000 22.848 0.703 0.447 0.700 0.776 18.890 0.000 16.062
40 Bujnicki Group (Bujnicki ) 3 Server 78.530 46.952 0.362 0.000 0.525 0.099 24.050 0.000 17.020
41 Bujnicki Group (Bujnicki ) 7 Server 70.550 28.332 0.644 0.224 0.685 0.657 21.200 0.002 18.257
42 Bujnicki Group (Bujnicki ) 2 Server 73.180 26.041 0.718 0.316 0.729 0.776 21.400 0.005 18.702
43 Bujnicki Group (Bujnicki ) 9 Server 64.780 27.285 0.699 0.316 0.718 0.743 22.410 0.008 19.078
44 Bujnicki Group (Bujnicki ) 10 Server 107.220 29.683 0.654 0.258 0.707 0.618 24.880 0.013 19.401
45 Xiao Group (Xiao ) 2 Server 33.710 35.882 0.685 0.447 0.676 0.776 34.770 0.742 24.568
46 Xiao Group (Xiao ) 4 Server 32.800 36.375 0.676 0.447 0.662 0.776 34.620 0.743 24.575
47 Xiao Group (Xiao ) 5 Server 32.350 35.916 0.685 0.447 0.676 0.776 33.950 0.746 24.592
48 Xiao Group (Xiao ) 7 Server 32.800 35.625 0.690 0.447 0.684 0.776 34.220 0.746 24.592
49 Xiao Group (Xiao ) 9 Server 34.620 36.413 0.676 0.447 0.662 0.776 35.040 0.748 24.601
50 Xiao Group (Xiao ) 3 Server 32.800 36.118 0.681 0.447 0.671 0.776 33.990 0.748 24.604
51 Xiao Group (Xiao ) 6 Server 31.890 36.459 0.676 0.447 0.662 0.776 34.490 0.753 24.631
52 Xiao Group (Xiao ) 10 Server 34.170 36.476 0.676 0.447 0.662 0.776 35.600 0.755 24.643
53 Xiao Group (Xiao ) 1 Server 35.080 36.224 0.681 0.447 0.671 0.776 35.360 0.761 24.676
54 Xiao Group (Xiao ) 8 Server 34.620 36.380 0.681 0.447 0.671 0.776 34.870 0.779 24.782
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 32.800 35.139 4.555 5.924
DI 21.042 24.527 11.858 13.544
INF all 0.683 0.682 0.736 0.732
INF nwc 0.258 0.262 0.316 0.263
INF stacking 0.680 0.694 0.748 0.739
INF wc 0.776 0.753 0.825 0.809
MCQ 21.415 23.971 18.605 19.409
P-Value 0.000 0.222 0.000 0.000
RMSD 14.041 16.341 8.805 9.769

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD