Completed Puzzles Puzzle PZ17 Results
Description
Pistol ribozyme.
RNA sequence (5' to 3')
CGUGGUUAGGGCCACGUUAAAUAGUUGCUUAAGCCCUAAGCGUUGAUAAA UAUCAGGUGCAA
Experimental structure(s)
rndiPOkkJOSoIJ4gSz5htoLpIEXMW2xt-solutionPZ17.pdb RLvAyiQgkbsRcDpcid8njAIOrGv8B924-solutionPZ17_1.pdb DDRVSOxhhXrn1jattsPDD0Zf04wwgdij-solutionPZ17_2.pdb
References

A. Ren, N. Vušurović, J. Gebetsberger, P. Gao, M. Juen, C. Kreutz, R. Micura and D. J. Patel (2016) Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage. Nature Chemical Biology, 12: 702–708

PDB ID:
5k7c
Opening date:
06 Jun 2016, 23:24
Closing date (Human category):
05 Jul 2016, 23:24
Closing date (Webserver category):
08 Jun 2016, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Bujnicki Group (Bujnicki ) 1 Server 151.060 7.494 0.687 0.000 0.692 0.839 25.920 0.000 5.145
2 Das Group (Das ) 4 Human 7.040 10.222 0.698 0.000 0.701 0.858 24.890 0.000 7.134
3 Bujnicki Group (Bujnicki ) 7 Server 158.610 11.242 0.677 0.000 0.700 0.830 26.570 0.000 7.608
4 Das Group (Das ) 1 Human 3.020 11.138 0.772 0.000 0.779 0.906 23.330 0.000 8.602
5 Das Group (Das ) 8 Human 7.540 12.061 0.719 0.000 0.718 0.878 25.360 0.000 8.673
6 Das Group (Das ) 9 Human 6.530 12.482 0.702 0.000 0.717 0.830 24.080 0.000 8.766
7 Chen Group (Chen ) 5 Human 157.150 16.194 0.583 0.000 0.633 0.750 24.070 0.000 9.443
8 Bujnicki Group (Bujnicki ) 7 Human 1.010 15.637 0.695 0.000 0.693 0.830 25.530 0.000 10.863
9 Das Group (Das ) 7 Human 12.560 16.296 0.672 0.000 0.675 0.830 25.230 0.000 10.955
10 Das Group (DasExtraInfo ) 1 Human 10.050 15.666 0.703 0.218 0.701 0.830 24.920 0.000 11.021
11 Das Group (Das ) 2 Human 6.530 15.955 0.705 0.000 0.731 0.830 27.400 0.000 11.250
12 Das Group (Das ) 6 Human 4.020 17.218 0.668 0.000 0.659 0.830 24.600 0.000 11.509
13 Chen Group (Chen ) 2 Human 101.860 16.782 0.691 0.000 0.701 0.830 21.340 0.000 11.605
14 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 15.090 19.334 0.609 0.000 0.545 0.830 29.300 0.000 11.779
15 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 69.040 23.599 0.505 0.000 0.538 0.559 23.910 0.000 11.913
16 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 9.050 19.884 0.604 - 0.505 0.872 26.940 0.000 12.011
17 Das Group (DasExtraInfo ) 2 Human 10.050 17.157 0.703 0.000 0.701 0.839 25.270 0.000 12.070
18 Bujnicki Group (Bujnicki ) 6 Server 119.780 19.898 0.613 0.000 0.612 0.781 26.000 0.000 12.200
19 Bujnicki Group (Bujnicki ) 8 Human 0.000 17.038 0.718 - 0.716 0.839 25.130 0.000 12.234
20 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 6.540 22.794 0.540 0.000 0.424 0.830 28.000 0.000 12.301
21 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 11.070 20.591 0.598 - 0.514 0.830 28.780 0.000 12.311
22 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 10.560 19.893 0.622 - 0.545 0.850 29.510 0.000 12.370
23 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Server 11.070 22.801 0.551 0.000 0.462 0.800 27.570 0.000 12.558
24 Bujnicki Group (Bujnicki ) 8 Server 152.960 19.714 0.648 0.000 0.631 0.810 29.570 0.000 12.768
25 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 6 Server 12.580 22.968 0.557 - 0.462 0.800 28.490 0.000 12.784
26 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 7 Server 14.080 21.871 0.586 - 0.514 0.800 26.920 0.000 12.823
27 Ding Group (Ding ) 7 Human 9.050 21.036 0.611 0.000 0.589 0.769 26.860 0.000 12.860
28 Das Group (DasExtraInfo ) 3 Human 13.070 18.519 0.714 - 0.725 0.810 26.670 0.000 13.227
29 Ding Group (Ding ) 10 Human 8.540 23.418 0.572 0.000 0.552 0.738 26.370 0.000 13.390
30 Major Group (Major ) 10 Human 15.090 42.579 0.315 0.000 0.398 0.212 49.290 0.000 13.402
31 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Server 9.560 22.815 0.593 - 0.545 0.769 27.100 0.000 13.518
32 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 8 Server 8.050 23.232 0.582 0.000 0.512 0.813 27.120 0.000 13.519
33 Xiao Group (Xiao ) 7 Human 0.500 30.549 0.453 0.000 0.556 0.447 42.400 0.000 13.849
34 Bujnicki Group (Bujnicki ) 5 Human 5.030 20.625 0.676 0.000 0.698 0.763 29.830 0.000 13.952
35 Bujnicki Group (Bujnicki ) 1 Human 3.520 21.120 0.662 - 0.659 0.776 26.040 0.000 13.977
36 Bujnicki Group (Bujnicki ) 9 Human 3.520 21.120 0.662 - 0.659 0.776 26.040 0.000 13.977
37 Xiao Group (Xiao ) 9 Human 14.080 26.787 0.525 0.000 0.576 0.558 45.200 0.000 14.076
38 Bujnicki Group (Bujnicki ) 9 Server 156.440 22.519 0.634 0.000 0.661 0.730 25.290 0.000 14.285
39 Bujnicki Group (Bujnicki ) 6 Human 0.000 21.370 0.672 - 0.663 0.810 28.520 0.000 14.354
40 Bujnicki Group (Bujnicki ) 10 Human 0.000 24.147 0.595 0.000 0.593 0.732 26.730 0.000 14.378
41 Bujnicki Group (Bujnicki ) 2 Human 0.000 24.147 0.595 0.000 0.593 0.732 26.730 0.000 14.378
42 Ding Group (Ding ) 3 Human 10.050 25.198 0.576 0.000 0.605 0.632 25.130 0.000 14.507
43 Xiao Group (Xiao ) 5 Human 27.670 27.706 0.526 0.000 0.526 0.674 37.150 0.000 14.562
44 Bujnicki Group (Bujnicki ) 3 Human 0.000 24.765 0.591 0.000 0.586 0.750 28.990 0.000 14.634
45 Chen Group (Chen ) 6 Human 176.170 24.376 0.605 0.000 0.634 0.723 27.130 0.000 14.750
46 Ding Group (Ding ) 8 Human 13.070 24.064 0.614 0.000 0.579 0.821 25.580 0.000 14.780
47 Major Group (Major ) 6 Human 1.010 27.323 0.544 0.000 0.678 0.404 40.350 0.000 14.874
48 Xiao Group (Xiao ) 1 Human 13.080 28.248 0.532 0.000 0.524 0.710 36.380 0.000 15.023
49 Ding Group (Ding ) 1 Human 8.040 25.280 0.594 0.000 0.677 0.550 25.300 0.000 15.024
50 Dokholyan Group (Dohkolyan ) 3 Human 18.590 22.326 0.673 0.000 0.650 0.850 26.280 0.000 15.030
51 Bujnicki Group (Bujnicki ) 4 Server 100.700 23.272 0.648 0.000 0.638 0.793 26.330 0.000 15.071
52 Chen Group (Chen ) 4 Human 166.410 25.050 0.604 0.000 0.667 0.667 27.400 0.000 15.142
53 Bujnicki Group (Bujnicki ) 6 Server 140.130 25.105 0.604 0.000 0.645 0.683 27.090 0.000 15.175
54 Xiao Group (Xiao ) 3 Human 0.000 26.453 0.586 0.000 0.677 0.577 42.600 0.001 15.508
55 Xiao Group (Xiao ) 10 Human 2.010 29.188 0.532 0.000 0.576 0.607 47.480 0.001 15.533
56 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 10 Server 9.560 28.418 0.548 - 0.533 0.682 33.400 0.001 15.586
57 Bujnicki Group (Bujnicki ) 3 Server 124.870 25.470 0.612 0.000 0.602 0.746 27.880 0.001 15.588
58 Chen Group (Chen ) 9 Human 107.140 24.106 0.647 0.000 0.675 0.750 20.200 0.001 15.598
59 Bujnicki Group (Bujnicki ) 1 Server 137.970 30.320 0.515 0.000 0.625 0.500 24.140 0.001 15.613
60 Ding Group (Ding ) 4 Human 10.050 26.457 0.595 0.000 0.684 0.542 26.220 0.001 15.745
61 Xiao Group (Xiao ) 8 Human 16.600 31.954 0.499 - 0.562 0.447 45.230 0.002 15.949
62 Ding Group (Ding ) 5 Human 8.540 24.960 0.642 - 0.730 0.564 24.750 0.002 16.017
63 Ding Group (Ding ) 2 Human 11.060 30.017 0.534 0.000 0.566 0.580 27.680 0.002 16.039
64 Bujnicki Group (Bujnicki ) 4 Human 0.000 26.015 0.618 0.000 0.601 0.781 27.680 0.003 16.075
65 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 9 Server 10.560 29.971 0.537 0.000 0.517 0.717 34.100 0.003 16.096
66 Bujnicki Group (Bujnicki ) 2 Server 135.750 24.856 0.648 - 0.645 0.760 24.540 0.003 16.098
67 Chen Group (Chen ) 1 Human 101.960 24.890 0.647 0.000 0.642 0.791 26.500 0.003 16.111
68 Dokholyan Group (Dohkolyan ) 2 Human 23.620 26.883 0.605 0.000 0.625 0.693 25.550 0.004 16.275
69 Major Group (Major ) 7 Human 2.010 35.610 0.461 0.218 0.497 0.474 40.850 0.005 16.430
70 Chen Group (Chen ) 7 Human 4.520 25.664 0.641 - 0.582 0.872 33.130 0.005 16.451
71 Major Group (Major ) 9 Human 13.080 57.049 0.290 0.000 0.311 0.338 54.070 0.005 16.526
72 Xiao Group (Xiao ) 2 Human 0.000 27.269 0.608 - 0.607 0.717 41.940 0.006 16.577
73 Chen Group (Chen ) 8 Human 1.510 24.924 0.666 - 0.625 0.868 35.730 0.006 16.607
74 Major Group (Major ) 8 Human 0.000 36.962 0.451 0.000 0.484 0.496 45.870 0.007 16.652
75 Ding Group (Ding ) 9 Human 7.040 27.002 0.620 0.000 0.560 0.850 27.340 0.007 16.729
76 Major Group (Major ) 1 Human 0.500 29.638 0.567 0.000 0.604 0.620 30.410 0.008 16.811
77 Ding Group (Ding ) 6 Human 10.050 30.062 0.563 0.000 0.497 0.821 25.480 0.010 16.934
78 Major Group (Major ) 3 Human 0.000 30.272 0.563 - 0.597 0.593 35.750 0.012 17.046
79 Xiao Group (Xiao ) 6 Human 29.680 31.968 0.538 0.000 0.586 0.607 43.720 0.015 17.207
80 Chen Group (Chen ) 3 Human 0.000 28.096 0.617 0.000 0.593 0.783 39.300 0.018 17.349
81 Xiao Group (Xiao ) 4 Human 0.500 35.354 0.493 0.000 0.524 0.539 43.550 0.020 17.423
82 Major Group (Major ) 2 Human 0.000 33.499 0.539 - 0.564 0.581 32.580 0.044 18.040
83 Major Group (Major ) 5 Human 0.000 35.034 0.527 0.000 0.550 0.586 37.350 0.071 18.472
84 Major Group (Major ) 4 Human 0.000 33.058 0.565 - 0.625 0.548 36.500 0.088 18.687
85 Chen Group (Chen ) 10 Human 0.500 50.925 0.372 0.000 0.506 0.191 26.390 0.114 18.954
86 Dokholyan Group (Dohkolyan ) 1 Human 17.090 42.274 0.515 0.000 0.587 0.503 25.320 0.637 21.751
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 84.870 76.918 7.290 18.758
DI 22.892 22.412 25.005 25.591
INF all 0.599 0.594 0.605 0.595
INF nwc 0.000 0.000 0.000 0.007
INF stacking 0.574 0.573 0.605 0.611
INF wc 0.787 0.756 0.744 0.691
MCQ 27.015 27.344 27.370 31.186
P-Value 0.000 0.000 0.000 0.017
RMSD 13.171 13.133 14.827 14.519

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD