Completed Puzzles Puzzle PZ21 Results
Description
Guanidine III Riboswitch
RNA sequence (5' to 3')
CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC
Experimental structure(s)
d1m5EHh3wr3ibK1ZIlmcWuP7EGzrhGB7-solutionPZ21.pdb 0k8zs3yZ0eKYzDgIpzJ1EXAGTHyZjxEa-solutionPZ21_1.pdb jqYa2hxo76la9lt5zPCQ0F9LGuyTl18s-solutionPZ21_2.pdb
References

L. Huang, J. Wang, T. J. Wilson and D. M. J. Lilley (2017) Structure of the Guanidine III Riboswitch. Cell Chem Biol, 2017 24(11): 1407-1415.e2.

PDB ID:
5nwq
Opening date:
12 Jun 2017, 23:24
Closing date (Human category):
03 Jul 2017, 23:24
Closing date (Webserver category):
14 Jun 2017, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
TM-score
Details
1 Das Group (DasLORES ) 1 Human 9.770 4.747 0.768 0.316 0.806 0.917 22.410 0.000 3.646 0.306
2 Chen Group (ChenHighLig ) 2 Human 73.040 5.774 0.643 0.000 0.679 0.815 28.640 0.000 3.715 0.325
3 Chen Group (ChenLowLig ) 2 Human 72.290 5.774 0.643 0.000 0.679 0.815 28.630 0.000 3.715 0.325
4 Chen Group (ChenHighLig ) 1 Human 128.210 5.600 0.710 0.000 0.767 0.957 21.160 0.000 3.974 0.322
5 Chen Group (ChenLowLig ) 1 Human 127.450 5.600 0.710 0.000 0.767 0.957 21.160 0.000 3.974 0.322
6 Das Group (DasLORES ) 2 Human 7.520 5.903 0.681 0.000 0.734 0.917 20.650 0.000 4.022 0.310
7 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 13.530 7.702 0.585 0.250 0.482 0.957 27.780 0.000 4.506 0.227
8 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 8.270 7.920 0.577 0.224 0.494 0.920 34.000 0.000 4.573 0.278
9 Chen Group (ChenHighLig ) 4 Human 218.940 7.770 0.591 0.000 0.647 0.913 25.520 0.000 4.592 0.244
10 Chen Group (ChenLowLig ) 4 Human 217.420 7.770 0.591 0.000 0.647 0.913 25.520 0.000 4.592 0.244
11 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 11.280 8.002 0.576 0.000 0.522 0.917 31.270 0.000 4.612 0.218
12 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 10.530 8.008 0.576 0.250 0.482 0.917 30.480 0.000 4.616 0.213
13 Das Group (Das ) 3 Human 15.790 8.362 0.561 0.000 0.603 0.920 25.550 0.000 4.689 0.335
14 Chen Group (ChenHighLig ) 3 Human 105.660 7.804 0.634 0.000 0.622 0.957 24.080 0.000 4.949 0.257
15 Chen Group (ChenLowLig ) 3 Human 107.920 7.804 0.634 0.000 0.622 0.957 24.080 0.000 4.949 0.257
16 Das Group (Das ) 2 Human 20.300 7.527 0.680 0.000 0.770 0.917 21.370 0.000 5.116 0.285
17 Das Group (Das ) 4 Human 11.280 7.782 0.680 0.000 0.754 0.917 20.440 0.000 5.293 0.254
18 Das Group (Das ) 1 Human 16.540 8.147 0.654 0.000 0.719 0.881 20.790 0.000 5.328 0.302
19 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Human 12.030 9.974 0.552 - 0.479 0.909 30.320 0.000 5.503 0.213
20 Das Group (Das ) 5 Human 13.530 7.361 0.777 0.559 0.800 0.881 21.600 0.000 5.717 0.312
21 Das Group (DasLORES ) 4 Human 3.760 9.402 0.657 0.000 0.691 0.870 20.540 0.000 6.177 0.197
22 Bujnicki Group (Bujnicki ) 4 Human 0.000 9.483 0.674 0.000 0.688 0.917 24.550 0.000 6.392 0.229
23 Bujnicki Group (Bujnicki ) 1 Human 0.000 10.237 0.661 0.000 0.699 0.870 24.210 0.000 6.763 0.280
24 Chen Group (ChenHighLig ) 5 Human 126.040 10.783 0.645 0.000 0.669 0.881 32.550 0.000 6.960 0.289
25 Chen Group (ChenLowLig ) 5 Human 128.300 10.783 0.645 0.000 0.669 0.881 32.550 0.000 6.960 0.289
26 Bujnicki Group (Bujnicki ) 2 Human 24.790 12.523 0.692 0.000 0.754 0.836 22.560 0.000 8.671 0.273
27 Das Group (DasLORES ) 5 Human 5.260 13.490 0.652 0.000 0.683 0.870 23.400 0.000 8.790 0.184
28 Bujnicki Group (Bujnicki ) 4 Server 118.530 20.692 0.511 - 0.613 0.433 24.870 0.001 10.566 0.160
29 Bujnicki Group (Bujnicki ) 2 Server 116.540 21.115 0.544 - 0.638 0.490 25.410 0.003 11.481 0.189
30 Bujnicki Group (Bujnicki ) 1 Server 116.450 28.449 0.416 0.000 0.500 0.377 26.620 0.006 11.845 0.235
31 Bujnicki Group (Bujnicki ) 3 Human 0.000 28.214 0.423 0.000 0.500 0.389 26.960 0.007 11.939 0.253
32 Xiao Group (Xiao ) 3 Server 0.000 25.288 0.477 0.000 0.549 0.603 39.750 0.009 12.053 0.138
33 Xiao Group (Xiao ) 1 Server 37.590 34.549 0.350 0.000 0.325 0.577 41.440 0.009 12.094 0.181
34 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 18.050 19.581 0.619 0.000 0.577 0.957 32.980 0.009 12.117 0.190
35 Xiao Group (Xiao ) 2 Server 46.620 34.756 0.356 0.000 0.384 0.496 52.470 0.014 12.385 0.190
36 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Server 9.020 21.959 0.592 0.000 0.549 0.957 32.880 0.031 12.994 0.184
37 Bujnicki Group (Bujnicki ) 3 Server 117.560 26.166 0.501 0.000 0.615 0.403 30.040 0.036 13.107 0.229
38 Bujnicki Group (Bujnicki ) 5 Server 117.560 26.166 0.501 0.000 0.615 0.403 30.040 0.036 13.107 0.229
39 Sanbonmatsu Group (Sanbonmatsu ) 3 Human 124.430 30.041 0.461 0.000 0.519 0.522 33.910 0.084 13.860 0.149
40 Sanbonmatsu Group (Sanbonmatsu ) 4 Human 124.430 30.041 0.461 0.000 0.519 0.522 33.910 0.084 13.860 0.149
41 Das Group (DasLORES ) 3 Human 6.020 22.484 0.633 0.000 0.657 0.881 24.970 0.121 14.239 0.210
42 Sanbonmatsu Group (Sanbonmatsu ) 1 Human 109.190 29.523 0.495 0.000 0.522 0.609 34.120 0.169 14.616 0.156
43 Sanbonmatsu Group (Sanbonmatsu ) 2 Human 108.430 29.523 0.495 0.000 0.522 0.609 34.110 0.169 14.616 0.156
44 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 14.290 33.667 0.437 0.183 0.487 0.462 33.810 0.183 14.714 0.208
45 Das Group (Das ) 2 Server 8.270 31.187 0.512 0.000 0.599 0.583 26.990 0.421 15.984 0.221
46 Das Group (Das ) 10 Server 10.530 28.466 0.562 0.000 0.669 0.583 23.610 0.423 15.992 0.227
47 Das Group (Das ) 6 Server 4.510 30.677 0.547 0.000 0.660 0.583 23.740 0.594 16.772 0.238
48 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Server 6.020 35.649 0.471 0.000 0.484 0.639 24.900 0.598 16.786 0.190
49 Xiao Group (Xiao ) 5 Server 0.750 31.465 0.552 0.000 0.611 0.639 36.280 0.719 17.384 0.242
50 Das Group (Das ) 8 Server 5.260 34.086 0.512 0.000 0.599 0.609 24.010 0.734 17.469 0.220
51 Das Group (Das ) 3 Server 8.270 34.360 0.512 0.000 0.599 0.560 24.480 0.759 17.609 0.210
52 Das Group (Das ) 1 Server 9.020 36.856 0.481 0.000 0.550 0.560 26.960 0.780 17.732 0.214
53 Das Group (Das ) 9 Server 3.010 31.243 0.570 0.000 0.656 0.609 25.720 0.792 17.808 0.214
54 Xiao Group (Xiao ) 4 Server 1.510 34.607 0.516 0.000 0.575 0.609 35.760 0.798 17.847 0.206
55 Das Group (Das ) 7 Server 11.280 33.515 0.534 0.000 0.647 0.540 23.860 0.805 17.892 0.219
56 Das Group (Das ) 5 Server 6.020 39.469 0.454 0.000 0.498 0.583 26.520 0.811 17.931 0.228
57 Das Group (Das ) 4 Server 7.520 32.328 0.557 0.000 0.667 0.583 25.220 0.825 18.021 0.212
58 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 9.020 32.619 0.552 0.000 0.599 0.674 22.700 0.825 18.022 0.163
59 Bujnicki Group (Bujnicki ) 5 Human 0.750 54.797 0.394 0.000 0.590 0.000 26.250 0.998 21.570 0.197
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 9.020 32.128 16.165 57.726
DI 31.465 30.357 8.078 13.137
INF all 0.512 0.505 0.639 0.612
INF nwc 0.000 0.007 0.000 0.047
INF stacking 0.599 0.571 0.663 0.640
INF wc 0.583 0.580 0.895 0.821
MCQ 26.620 29.642 25.520 26.472
P-Value 0.423 0.409 0.000 0.048
RMSD 15.992 15.188 5.311 7.279
TM-score 0.212 0.205 0.256 0.252

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD
Violin plot for TM-score