Completed Puzzles Puzzle PZ25 Results
Description
2-dG-II riboswitch
RNA sequence (5' to 3')
GGGUGUAAUCUCCAAAAUAUGGUUGGGGAGCCUCCACCAGUGAA CCGUAAAAUCGCUGUCACCACCCAG
Experimental structure(s)
6Lp7v7PomfRIwS5cthNhXysWr4u16t9G-solutionPZ25.pdb
References

M. M. Matyjasik and R.T. Batey (2019) Structural basis for 2-deoxyguanosine recognition by the 2-dG-II class of riboswitches. Nucleic Acids Research, 47(20): 10931-10941

PDB ID:
6p2h
Opening date:
29 Jul 2019, 23:24
Closing date (Human category):
23 Aug 2019, 23:24
Closing date (Webserver category):
31 Jul 2019, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Chen Group (Chen ) 5 Human 0.000 3.064 0.832 0.533 0.829 0.977 19.030 0.000 2.551
2 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 14.000 3.338 0.803 0.615 0.784 0.930 16.960 0.000 2.681
3 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 15.800 3.301 0.816 0.570 0.804 0.952 19.450 0.000 2.692
4 Chen Group (Chen ) 8 Human 0.000 3.316 0.817 0.603 0.801 0.956 19.050 0.000 2.709
5 Chen Group (Chen ) 3 Human 0.000 3.433 0.828 0.570 0.822 0.956 19.350 0.000 2.841
6 Bujnicki Group (Bujnicki ) 5 Human 6.770 3.349 0.854 0.704 0.841 0.956 16.490 0.000 2.860
7 Chen Group (Chen ) 9 Human 0.000 3.432 0.837 0.603 0.826 0.977 19.620 0.000 2.874
8 Chen Group (Chen ) 1 Human 0.000 3.659 0.793 0.570 0.785 0.910 20.360 0.000 2.903
9 Bujnicki Group (Bujnicki ) 2 Human 7.670 3.768 0.808 0.667 0.787 0.930 17.040 0.000 3.045
10 Chen Group (Chen ) 7 Human 0.000 3.677 0.831 0.570 0.833 0.935 20.410 0.000 3.054
11 Chen Group (Chen ) 4 Human 0.000 3.776 0.809 0.533 0.807 0.935 20.220 0.000 3.056
12 Bujnicki Group (Bujnicki ) 3 Human 7.670 3.789 0.810 0.603 0.801 0.930 17.900 0.000 3.069
13 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 9.030 3.757 0.821 0.533 0.823 0.952 18.830 0.000 3.086
14 Chen Group (Chen ) 10 Human 0.000 3.769 0.821 0.503 0.818 0.977 20.280 0.000 3.094
15 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 14.900 4.094 0.774 0.426 0.768 0.952 18.240 0.000 3.170
16 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Human 11.290 4.059 0.783 0.426 0.781 0.952 17.650 0.000 3.180
17 Bujnicki Group (Bujnicki ) 1 Human 3.610 3.940 0.817 0.704 0.793 0.930 16.980 0.000 3.218
18 Chen Group (Chen ) 2 Human 0.000 4.278 0.781 0.570 0.767 0.910 18.970 0.000 3.343
19 Bujnicki Group (Bujnicki ) 4 Human 5.870 4.241 0.819 0.667 0.804 0.930 17.420 0.000 3.472
20 Chen Group (Chen ) 6 Human 0.000 4.282 0.812 0.533 0.812 0.935 19.440 0.000 3.477
21 Das Group (Das ) 5 Human 5.430 4.543 0.777 0.640 0.722 0.977 17.050 0.000 3.529
22 Das Group (Das ) 7 Human 7.240 4.792 0.772 0.636 0.736 0.930 16.810 0.000 3.700
23 Das Group (Das ) 8 Human 9.050 5.523 0.762 0.533 0.736 0.930 17.660 0.000 4.211
24 Xiao Group (Xiao ) 1 Human 14.470 7.961 0.568 0.174 0.561 0.732 21.730 0.000 4.522
25 Xiao Group (Xiao ) 4 Human 14.010 7.373 0.630 0.151 0.630 0.818 22.740 0.000 4.644
26 Xiao Group (Xiao ) 5 Human 14.910 7.278 0.638 0.151 0.643 0.818 22.530 0.000 4.646
27 Xiao Group (Xiao ) 3 Human 14.460 7.223 0.643 0.174 0.643 0.818 22.470 0.000 4.647
28 Sanbonmatsu Group (Sanbonmatsu ) 1 Human 30.690 8.615 0.666 - 0.629 0.927 24.790 0.000 5.740
29 Sanbonmatsu Group (Sanbonmatsu ) 2 Human 30.690 8.615 0.666 - 0.629 0.927 24.790 0.000 5.740
30 Das Group (Das ) 1 Human 9.050 7.983 0.720 0.455 0.685 0.952 19.280 0.000 5.748
31 Das Group (Das ) 9 Human 14.490 8.872 0.671 0.418 0.636 0.905 18.830 0.000 5.951
32 Das Group (Das ) 6 Human 9.510 9.061 0.733 0.418 0.729 0.927 19.500 0.000 6.638
33 Das Group (Das ) 3 Human 9.050 9.054 0.734 0.477 0.692 0.976 19.160 0.000 6.646
34 Das Group (Das ) 10 Human 56.360 9.919 0.694 0.435 0.667 0.905 20.360 0.000 6.887
35 Das Group (Das ) 2 Human 124.600 11.190 0.627 0.286 0.603 0.857 21.700 0.000 7.020
36 Das Group (Das ) 4 Human 4.980 9.858 0.727 0.435 0.709 0.930 17.360 0.000 7.170
37 Dokholyan Group (Dokholyan ) 1 Server 1.350 12.108 0.631 0.000 0.648 0.791 30.030 0.000 7.643
38 Bujnicki Group (Bujnicki ) 1 Server 145.960 12.740 0.612 0.000 0.642 0.757 22.950 0.000 7.796
39 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 10.840 12.939 0.636 - 0.584 0.901 27.670 0.000 8.230
40 Ding Group (Ding ) 2 Human 13.090 12.404 0.691 0.000 0.658 0.976 22.360 0.000 8.577
41 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 18.510 13.823 0.626 - 0.545 0.927 36.300 0.000 8.646
42 Bujnicki Group (Bujnicki ) 5 Server 138.150 14.246 0.615 0.000 0.642 0.744 22.630 0.000 8.760
43 Bujnicki Group (Bujnicki ) 3 Server 129.630 14.785 0.652 0.000 0.655 0.884 26.690 0.000 9.637
44 Bujnicki Group (Bujnicki ) 4 Server 116.820 15.188 0.635 0.000 0.617 0.884 20.240 0.000 9.649
45 Bujnicki Group (Bujnicki ) 2 Server 141.560 14.750 0.667 0.000 0.709 0.786 24.460 0.000 9.835
46 Ding Group (Ding ) 3 Human 10.380 13.858 0.710 0.000 0.679 0.976 20.900 0.000 9.843
47 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 17.160 15.123 0.663 0.000 0.654 0.901 28.280 0.000 10.022
48 Ding Group (Ding ) 1 Human 8.580 15.808 0.668 0.000 0.623 0.976 20.250 0.000 10.560
49 Xiao Group (Xiao ) 2 Human 0.000 40.403 0.615 0.135 0.630 0.772 21.170 0.752 24.844
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 116.820 79.998 8.805 12.441
DI 14.246 13.967 4.413 7.116
INF all 0.635 0.637 0.776 0.749
INF nwc 0.000 0.000 0.518 0.426
INF stacking 0.642 0.633 0.752 0.733
INF wc 0.884 0.842 0.930 0.923
MCQ 26.690 26.583 19.395 19.628
P-Value 0.000 0.000 0.000 0.019
RMSD 8.760 8.913 3.503 5.041

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD