Completed Puzzles Puzzle PZ26 Results
Description
tRNA complex (Geobacillus kaustophilus glyQ)
RNA sequence (5' to 3')
GAAAGUGGGUGCGCGUUUGGCGCAUCAACUCGGGUGGAACCG CGGGAGCUACGCUCUCGUCCCGAG
Experimental structure(s)
InbHLw1aDqb3PYgMgyLusqGphTP1sA5l-solutionPZ26.pdb
References

S. Li, Z. Su, J. Lehmann, V. Stamatopoulou, N. Giarimoglou, F. E. Henderson, L. Fan, G. D. Pintille, K. Zhang, M. Chen, S. J. Ludtke, Y. X. Wang, C. Stathopoulos, W. Chiu and J. Zhang (2019) Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nature Structural & Molecular Biology, 26(12): 1094-1105

PDB ID:
6pmo
Opening date:
21 Oct 2019, 22:24
Closing date (Human category):
11 Nov 2019, 23:24
Closing date (Webserver category):
23 Oct 2019, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
TM-score
Details
1 Das Group (Das ) 9 Human 2.640 16.102 0.829 0.630 0.770 0.980 13.580 0.000 13.342 0.653
2 Bujnicki Group (Bujnicki ) 5 Human 0.220 17.057 0.820 0.680 0.767 0.959 16.120 0.000 13.983 0.655
3 Das Group (Das ) 2 Human 2.860 17.963 0.797 0.527 0.747 0.959 13.120 0.000 14.318 0.661
4 Das Group (Das ) 1 Server 2.860 17.963 0.797 0.527 0.747 0.959 13.120 0.000 14.318 0.661
5 Das Group (Das ) 5 Server 1.320 18.608 0.800 0.589 0.753 0.939 13.730 0.000 14.889 0.663
6 Das Group (Das ) 8 Server 3.080 18.769 0.798 0.556 0.741 0.969 13.690 0.000 14.974 0.660
7 Bujnicki Group (Bujnicki ) 3 Human 2.200 18.378 0.829 0.680 0.782 0.959 15.210 0.000 15.231 0.681
8 Das Group (Das ) 1 Human 2.420 18.672 0.818 0.589 0.759 0.980 13.440 0.000 15.278 0.652
9 Das Group (Das ) 5 Human 2.420 18.906 0.809 0.589 0.747 0.980 14.230 0.000 15.290 0.660
10 Das Group (Das ) 3 Server 2.420 18.906 0.809 0.589 0.747 0.980 14.230 0.000 15.290 0.660
11 Bujnicki Group (Bujnicki ) 2 Human 1.100 18.579 0.831 0.745 0.795 0.929 15.520 0.000 15.442 0.679
12 Das Group (Das ) 3 Human 2.640 19.129 0.819 0.527 0.767 0.990 14.010 0.000 15.662 0.651
13 Das Group (Das ) 10 Server 2.640 19.129 0.819 0.527 0.767 0.990 14.010 0.000 15.662 0.651
14 Bujnicki Group (Bujnicki ) 4 Human 0.440 19.047 0.825 0.680 0.772 0.970 15.850 0.000 15.721 0.660
15 Bujnicki Group (Bujnicki ) 1 Server 138.280 21.689 0.747 0.000 0.706 0.903 20.610 0.000 16.196 0.278
16 Das Group (Das ) 7 Human 1.760 20.264 0.808 0.589 0.747 0.980 13.620 0.000 16.370 0.657
17 Das Group (Das ) 6 Server 1.760 20.264 0.808 0.589 0.747 0.980 13.620 0.000 16.370 0.657
18 Bujnicki Group (Bujnicki ) 1 Human 0.220 19.836 0.835 0.630 0.785 0.980 15.540 0.000 16.562 0.666
19 Das Group (Das ) 4 Human 2.420 21.008 0.802 0.556 0.750 0.959 14.140 0.000 16.859 0.660
20 Das Group (Das ) 2 Server 2.420 21.008 0.802 0.556 0.750 0.959 14.140 0.000 16.859 0.660
21 Das Group (Das ) 6 Human 1.100 21.503 0.794 0.527 0.750 0.939 13.710 0.000 17.072 0.661
22 Das Group (Das ) 4 Server 1.100 21.503 0.794 0.527 0.750 0.939 13.710 0.000 17.072 0.661
23 Ding Group (Ding ) 2 Human 12.330 25.005 0.694 0.000 0.619 0.915 24.550 0.000 17.364 0.383
24 Das Group (Das ) 10 Human 3.740 21.288 0.822 0.589 0.759 0.990 13.650 0.000 17.501 0.657
25 Das Group (Das ) 8 Human 2.420 22.183 0.796 0.556 0.741 0.959 13.680 0.000 17.647 0.659
26 Das Group (Das ) 7 Server 2.420 22.183 0.796 0.556 0.741 0.959 13.680 0.000 17.647 0.659
27 Chen Group (Chen ) 5 Human 5.510 21.829 0.831 0.680 0.779 0.959 21.950 0.000 18.131 0.666
28 Bujnicki Group (Bujnicki ) 5 Server 164.500 -18.242 -1.000 - - - 19.420 0.000 18.242 0.297
29 Chen Group (Chen ) 9 Human 2.200 22.228 0.825 0.589 0.775 0.969 21.320 0.000 18.340 0.613
30 Chen Group (Chen ) 2 Human 3.080 22.947 0.805 0.745 0.736 0.959 21.250 0.000 18.479 0.663
31 Bujnicki Group (Bujnicki ) 3 Server 123.400 27.031 0.691 0.000 0.646 0.894 20.380 0.000 18.680 0.262
32 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 10.570 22.934 0.816 0.447 0.763 0.969 21.870 0.000 18.711 0.578
33 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 9.250 22.107 0.851 0.667 0.806 0.969 16.330 0.000 18.809 0.732
34 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 9.250 23.743 0.802 0.667 0.742 0.948 20.580 0.000 19.043 0.697
35 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 10.350 23.241 0.821 0.577 0.763 0.969 21.890 0.000 19.074 0.583
36 Ding Group (Ding ) 1 Human 13.210 25.789 0.750 0.000 0.679 0.958 21.820 0.000 19.338 0.377
37 Das Group (Das ) 9 Server 2.860 25.066 0.794 0.589 0.734 0.959 13.710 0.000 19.901 0.660
38 Ding Group (Ding ) 3 Human 13.870 28.314 0.713 0.000 0.631 0.969 23.030 0.000 20.186 0.372
39 Xiao Group (Xiao ) 3 Human 20.490 40.499 0.509 0.000 0.584 0.429 23.620 0.000 20.615 0.522
40 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 10.350 24.847 0.830 0.577 0.777 0.969 21.730 0.000 20.621 0.584
41 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 9.250 25.914 0.797 0.596 0.743 0.937 20.430 0.000 20.651 0.714
42 Bujnicki Group (Bujnicki ) 2 Server 155.690 30.050 0.712 0.000 0.661 0.928 20.840 0.000 21.398 0.282
43 Chen Group (Chen ) 6 Human 1.980 26.703 0.801 0.630 0.726 0.979 20.630 0.000 21.399 0.614
44 Chen Group (Chen ) 10 Human 2.640 26.090 0.821 0.589 0.776 0.958 21.140 0.000 21.417 0.616
45 Chen Group (Chen ) 1 Human 3.300 26.192 0.823 0.680 0.762 0.969 23.120 0.000 21.553 0.662
46 Chen Group (Chen ) 4 Human 2.640 27.142 0.805 0.745 0.726 0.979 20.750 0.000 21.857 0.670
47 Chen Group (Chen ) 8 Human 0.660 27.929 0.792 0.503 0.746 0.948 22.520 0.000 22.123 0.613
48 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 11.670 28.210 0.785 0.385 0.737 0.937 20.430 0.000 22.138 0.690
49 Xiao Group (Xiao ) 5 Human 24.670 44.023 0.513 0.000 0.584 0.429 23.620 0.000 22.586 0.522
50 Dokholyan Group (Dokholyan ) 1 Server 122.740 -23.467 -1.000 - - - 19.480 0.000 23.467 0.322
51 Chen Group (Chen ) 3 Human 2.860 28.731 0.825 0.745 0.757 0.979 21.430 0.000 23.705 0.656
52 Chen Group (Chen ) 7 Human 1.320 29.781 0.799 0.630 0.734 0.958 21.220 0.000 23.790 0.618
53 Dokholyan Group (Dokholyan ) 2 Server 141.060 -24.590 -1.000 - - - 20.980 0.000 24.590 0.226
54 Xiao Group (Xiao ) 2 Human 17.630 54.146 0.519 0.000 0.590 0.429 23.620 0.000 28.116 0.522
55 Bujnicki Group (Bujnicki ) 4 Server 155.810 -29.115 -1.000 - - - 22.430 0.002 29.115 0.196
56 Xiao Group (Xiao ) 1 Human 25.550 53.487 0.552 0.000 0.564 0.605 23.620 0.004 29.533 0.522
57 Xiao Group (Xiao ) 4 Human 24.680 58.165 0.513 0.000 0.584 0.429 23.620 0.006 29.841 0.522
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 6.165 52.727 2.640 6.696
DI 20.636 13.231 22.934 26.271
INF all 0.795 0.428 0.809 0.769
INF nwc 0.527 0.363 0.589 0.484
INF stacking 0.741 0.586 0.750 0.727
INF wc 0.939 0.759 0.959 0.898
MCQ 16.825 17.161 21.140 18.921
P-Value 0.000 0.000 0.000 0.000
RMSD 17.944 18.825 18.479 19.240
TM-score 0.660 0.528 0.653 0.609

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD
Violin plot for TM-score