Completed Puzzles Puzzle PZ26tBox Results
Description
T-box riboswitch (Geobacillus kaustophilus glyQ)
RNA sequence (5' to 3')
GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCAAGGTGG GGGTCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Experimental structure(s)
LRAdBQKWrae0BfCkfuI6Uh0dQpKvvffa-solutionPZ26tBox.pdb
References

S. Li, Z. Su, J. Lehmann, V. Stamatopoulou, N. Giarimoglou, F. E. Henderson, L. Fan, G. D. Pintille, K. Zhang, M. Chen, S. J. Ludtke, Y. X. Wang, C. Stathopoulos, W. Chiu and J. Zhang (2019) Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nature Structural & Molecular Biology, 26(12): 1094-1105

PDB ID:
6pmo
Opening date:
21 Oct 2019, 22:24
Closing date (Human category):
11 Nov 2019, 23:24
Closing date (Webserver category):
23 Oct 2019, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
TM-score
Details
1 Das Group (Das ) 6 Human 1.100 17.959 0.735 0.000 0.722 0.864 13.710 0.000 13.200 0.661
2 Das Group (Das ) 4 Server 1.100 17.959 0.735 0.000 0.722 0.864 13.710 0.000 13.200 0.661
3 Das Group (Das ) 8 Server 3.080 17.998 0.744 0.000 0.701 0.930 13.690 0.000 13.397 0.660
4 Bujnicki Group (Bujnicki ) 4 Server 155.810 19.433 0.732 - 0.683 0.853 22.430 0.000 14.219 0.196
5 Chen Group (Chen ) 9 Human 2.200 18.078 0.821 0.000 0.781 0.953 21.320 0.000 14.850 0.613
6 Das Group (Das ) 5 Server 1.320 20.950 0.749 0.000 0.729 0.864 13.730 0.001 15.695 0.663
7 Das Group (Das ) 5 Human 2.420 20.511 0.768 0.000 0.715 0.955 14.230 0.001 15.759 0.660
8 Das Group (Das ) 3 Server 2.420 20.511 0.768 0.000 0.715 0.955 14.230 0.001 15.759 0.660
9 Bujnicki Group (Bujnicki ) 2 Server 155.690 20.905 0.756 0.000 0.675 1.000 20.840 0.001 15.806 0.282
10 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 10.350 20.308 0.786 - 0.713 0.953 21.730 0.001 15.963 0.584
11 Ding Group (Ding ) 3 Human 13.870 21.450 0.746 0.000 0.675 0.953 23.030 0.001 16.011 0.372
12 Das Group (Das ) 3 Human 2.640 20.583 0.781 0.000 0.744 0.977 14.010 0.001 16.085 0.651
13 Das Group (Das ) 10 Server 2.640 20.583 0.781 0.000 0.744 0.977 14.010 0.001 16.085 0.651
14 Das Group (Das ) 4 Human 2.420 21.455 0.759 0.000 0.729 0.909 14.140 0.002 16.286 0.660
15 Das Group (Das ) 2 Server 2.420 21.455 0.759 0.000 0.729 0.909 14.140 0.002 16.286 0.660
16 Das Group (Das ) 10 Human 3.740 20.520 0.794 0.000 0.738 0.977 13.650 0.002 16.291 0.657
17 Das Group (Das ) 1 Human 2.420 20.964 0.780 0.000 0.729 0.955 13.440 0.002 16.356 0.652
18 Bujnicki Group (Bujnicki ) 2 Human 1.100 21.099 0.779 - 0.765 0.845 15.520 0.002 16.428 0.679
19 Das Group (Das ) 2 Human 2.860 22.243 0.740 0.000 0.710 0.909 13.120 0.002 16.452 0.661
20 Das Group (Das ) 1 Server 2.860 22.243 0.740 0.000 0.710 0.909 13.120 0.002 16.452 0.661
21 Ding Group (Ding ) 1 Human 13.210 20.095 0.821 - 0.785 0.929 21.820 0.002 16.507 0.377
22 Bujnicki Group (Bujnicki ) 3 Server 123.400 22.056 0.752 0.000 0.683 0.955 20.380 0.003 16.588 0.262
23 Bujnicki Group (Bujnicki ) 5 Server 164.500 20.747 0.800 0.000 0.780 0.909 19.420 0.003 16.597 0.297
24 Das Group (Das ) 7 Human 1.760 21.512 0.772 0.000 0.716 0.955 13.620 0.003 16.617 0.657
25 Das Group (Das ) 6 Server 1.760 21.512 0.772 0.000 0.716 0.955 13.620 0.003 16.617 0.657
26 Das Group (Das ) 8 Human 2.420 22.358 0.744 0.000 0.708 0.909 13.680 0.003 16.642 0.659
27 Das Group (Das ) 7 Server 2.420 22.358 0.744 0.000 0.708 0.909 13.680 0.003 16.642 0.659
28 Dokholyan Group (Dokholyan ) 1 Server 122.740 21.357 0.788 - 0.729 0.953 19.480 0.004 16.828 0.322
29 Bujnicki Group (Bujnicki ) 3 Human 2.200 22.078 0.763 0.000 0.723 0.909 15.210 0.004 16.852 0.681
30 Bujnicki Group (Bujnicki ) 4 Human 0.440 22.128 0.763 0.000 0.710 0.934 15.850 0.004 16.877 0.660
31 Bujnicki Group (Bujnicki ) 1 Server 138.280 21.202 0.806 0.000 0.777 0.914 20.610 0.006 17.096 0.278
32 Chen Group (Chen ) 5 Human 5.510 21.711 0.789 - 0.719 0.953 21.950 0.006 17.121 0.666
33 Das Group (Das ) 9 Human 2.640 21.759 0.797 0.000 0.745 0.955 13.580 0.009 17.346 0.653
34 Ding Group (Ding ) 2 Human 12.330 22.060 0.788 0.000 0.716 0.977 24.550 0.010 17.375 0.383
35 Chen Group (Chen ) 6 Human 1.980 23.411 0.743 - 0.643 0.953 20.630 0.010 17.387 0.614
36 Bujnicki Group (Bujnicki ) 1 Human 0.220 22.311 0.793 0.000 0.744 0.955 15.540 0.015 17.693 0.666
37 Bujnicki Group (Bujnicki ) 5 Human 0.220 -17.768 -1.000 - - - 16.120 0.017 17.768 0.655
38 Chen Group (Chen ) 8 Human 0.660 23.413 0.760 0.000 0.680 0.953 22.520 0.017 17.783 0.613
39 Das Group (Das ) 9 Server 2.860 24.092 0.740 0.000 0.693 0.909 13.710 0.018 17.824 0.660
40 Chen Group (Chen ) 4 Human 2.640 25.616 0.706 - 0.591 0.953 20.750 0.026 18.096 0.670
41 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 9.250 -18.211 -1.000 - - - 20.580 0.030 18.211 0.697
42 Dokholyan Group (Dokholyan ) 2 Server 141.060 24.002 0.759 0.000 0.729 0.909 20.980 0.030 18.220 0.226
43 Chen Group (Chen ) 2 Human 3.080 26.651 0.706 - 0.616 0.906 21.250 0.062 18.828 0.663
44 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 10.570 -19.323 -1.000 - - - 21.870 0.103 19.323 0.578
45 Chen Group (Chen ) 10 Human 2.640 25.467 0.762 0.000 0.732 0.905 21.140 0.113 19.413 0.616
46 Chen Group (Chen ) 7 Human 1.320 26.550 0.733 - 0.660 0.905 21.220 0.117 19.451 0.618
47 Chen Group (Chen ) 1 Human 3.300 24.562 0.793 - 0.723 0.953 23.120 0.121 19.485 0.662
48 Chen Group (Chen ) 3 Human 2.860 25.912 0.775 - 0.700 0.953 21.430 0.201 20.085 0.656
49 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 10.350 25.932 0.779 - 0.703 0.953 21.890 0.220 20.201 0.583
50 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 9.250 25.216 0.805 - 0.745 0.953 16.330 0.236 20.299 0.732
51 Xiao Group (Xiao ) 1 Human 25.550 48.562 0.425 - 0.469 0.355 23.620 0.300 20.652 0.522
52 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 9.250 -20.901 -1.000 - - - 20.430 0.350 20.901 0.714
53 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 11.670 -21.216 -1.000 - - - 20.430 0.417 21.216 0.690
54 Xiao Group (Xiao ) 3 Human 20.490 66.857 0.348 0.000 0.519 0.000 23.620 0.824 23.271 0.522
55 Xiao Group (Xiao ) 4 Human 24.680 66.857 0.348 0.000 0.519 0.000 23.620 0.824 23.271 0.522
56 Xiao Group (Xiao ) 5 Human 24.670 66.857 0.348 0.000 0.519 0.000 23.620 0.824 23.271 0.522
57 Xiao Group (Xiao ) 2 Human 17.630 69.403 0.361 0.000 0.532 0.000 23.620 0.973 25.069 0.522
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 6.165 52.727 2.640 6.696
DI 20.928 14.952 22.128 25.820
INF all 0.751 0.496 0.763 0.619
INF nwc 0.000 0.000 0.000 0.000
INF stacking 0.712 0.611 0.713 0.647
INF wc 0.909 0.784 0.953 0.769
MCQ 16.825 17.161 21.140 18.921
P-Value 0.003 0.044 0.010 0.137
RMSD 16.593 16.682 17.375 18.118
TM-score 0.660 0.528 0.653 0.609

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD
Violin plot for TM-score