Completed Puzzles Puzzle PZ27 Results
Description
tRNA complex (Bacillus subtilis glyQS)
RNA sequence (5' to 3')
GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCAAGGTGGG GGTCGCGGGTTCGAATCCCGTCTTCCGCTCCA
Experimental structure(s)
NHSxsLlYpYPw8JcGY6iOPrNRgFJzCfqq-solutionPZ27.pdb
References

S. Li, Z. Su, J. Lehmann, V. Stamatopoulou, N. Giarimoglou, F. E. Henderson, L. Fan, G. D. Pintille, K. Zhang, M. Chen, S. J. Ludtke, Y. X. Wang, C. Stathopoulos, W. Chiu and J. Zhang (2019) Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nature Structural & Molecular Biology, 26(12): 1094-1105

PDB ID:
6pom
Opening date:
21 Oct 2019, 23:24
Closing date (Human category):
11 Nov 2019, 23:24
Closing date (Webserver category):
23 Oct 2019, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
TM-score
Details
1 Das Group (Das ) 2 Human 7.730 12.712 0.796 0.592 0.745 0.960 17.820 0.000 10.115 0.157
2 Das Group (Das ) 2 Server 7.730 12.712 0.796 0.592 0.745 0.960 17.820 0.000 10.115 0.157
3 Das Group (Das ) 6 Server 6.970 12.927 0.799 0.690 0.739 0.960 17.950 0.000 10.333 0.159
4 Das Group (Das ) 5 Human 7.350 13.340 0.800 0.667 0.741 0.966 17.970 0.000 10.677 0.160
5 Das Group (Das ) 8 Server 7.350 -10.677 -1.000 - - - 17.970 0.000 10.677 0.160
6 Das Group (Das ) 8 Human 5.960 -10.838 -1.000 - - - 18.170 0.000 10.838 0.158
7 Das Group (Das ) 1 Server 5.960 13.590 0.797 0.645 0.747 0.941 18.170 0.000 10.838 0.158
8 Chen Group (Chen ) 9 Human 5.320 14.422 0.811 0.564 0.759 0.980 24.070 0.000 11.691 0.156
9 Chen Group (Chen ) 2 Human 5.450 15.001 0.780 0.600 0.719 0.959 25.790 0.000 11.701 0.184
10 Chen Group (Chen ) 4 Human 5.070 14.768 0.793 0.600 0.735 0.966 25.110 0.000 11.710 0.184
11 Das Group (Das ) 6 Human 6.340 -11.807 -1.000 - - - 18.080 0.000 11.807 0.159
12 Das Group (Das ) 9 Server 6.340 -11.807 -1.000 - - - 18.080 0.000 11.807 0.159
13 Das Group (Das ) 9 Human 6.970 14.736 0.803 0.667 0.751 0.947 18.050 0.000 11.830 0.164
14 Das Group (Das ) 7 Human 7.860 -12.122 -1.000 - - - 18.090 0.000 12.122 0.160
15 Das Group (Das ) 7 Server 7.860 -12.122 -1.000 - - - 18.090 0.000 12.122 0.160
16 Das Group (Das ) 3 Human 7.100 15.193 0.800 0.667 0.749 0.941 18.260 0.000 12.160 0.164
17 Das Group (Das ) 4 Server 7.100 15.193 0.800 0.667 0.749 0.941 18.260 0.000 12.160 0.164
18 Das Group (Das ) 1 Human 6.460 15.268 0.803 0.690 0.755 0.930 18.190 0.000 12.257 0.163
19 Das Group (Das ) 3 Server 6.460 15.268 0.803 0.690 0.755 0.930 18.190 0.000 12.257 0.163
20 Das Group (Das ) 10 Human 6.840 16.645 0.794 0.626 0.743 0.941 17.800 0.000 13.209 0.145
21 Chen Group (Chen ) 3 Human 3.040 17.657 0.771 0.564 0.710 0.952 24.380 0.000 13.622 0.194
22 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Server 9.510 18.678 0.755 0.462 0.691 0.933 21.480 0.000 14.099 0.189
23 Chen Group (Chen ) 1 Human 5.070 19.541 0.746 0.516 0.686 0.937 25.000 0.000 14.581 0.144
24 Chen Group (Chen ) 8 Human 4.060 18.534 0.795 0.621 0.737 0.960 25.270 0.000 14.740 0.146
25 Das Group (Das ) 4 Human 7.230 18.278 0.807 0.645 0.757 0.954 18.170 0.000 14.745 0.170
26 Das Group (Das ) 5 Server 7.230 18.278 0.807 0.645 0.757 0.954 18.170 0.000 14.745 0.170
27 Chen Group (Chen ) 5 Human 5.200 19.646 0.778 0.581 0.729 0.937 24.480 0.000 15.283 0.189
28 Bujnicki Group (Bujnicki ) 1 Human 2.150 21.862 0.716 0.552 0.692 0.811 23.800 0.000 15.648 0.190
29 Chen Group (Chen ) 10 Human 7.220 19.324 0.810 0.600 0.757 0.973 24.480 0.000 15.654 0.150
30 Bujnicki Group (Bujnicki ) 3 Human 3.170 22.426 0.710 0.573 0.695 0.776 23.810 0.000 15.933 0.196
31 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 11.280 21.166 0.755 0.602 0.680 0.939 22.780 0.000 15.986 0.175
32 Chen Group (Chen ) 7 Human 3.800 20.435 0.786 0.621 0.718 0.966 23.950 0.000 16.066 0.177
33 Bujnicki Group (Bujnicki ) 2 Human 1.390 22.833 0.718 0.645 0.687 0.815 23.650 0.000 16.403 0.184
34 Das Group (Das ) 10 Server 6.340 -16.598 -1.000 - - - 18.280 0.000 16.598 0.160
35 Chen Group (Chen ) 6 Human 3.170 21.555 0.791 0.581 0.737 0.958 24.800 0.000 17.044 0.170
36 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 10.900 24.319 0.784 0.522 0.718 0.972 25.370 0.000 19.064 0.182
37 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 10.900 24.262 0.788 0.533 0.726 0.972 24.740 0.000 19.126 0.152
38 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 9.510 27.333 0.757 0.456 0.689 0.953 21.740 0.000 20.701 0.162
39 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Server 11.030 28.066 0.768 0.462 0.708 0.945 23.170 0.000 21.553 0.166
40 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 11.410 27.458 0.786 0.572 0.721 0.966 22.040 0.000 21.582 0.170
41 Bujnicki Group (Bujnicki ) 4 Human 0.760 32.713 0.716 0.596 0.685 0.821 23.680 0.000 23.414 0.176
42 Bujnicki Group (Bujnicki ) 5 Human 3.930 32.839 0.717 0.596 0.691 0.809 24.100 0.000 23.548 0.198
43 Xiao Group (Xiao ) 5 Human 15.970 43.933 0.619 0.000 0.608 0.731 27.180 0.000 27.203 0.176
44 Xiao Group (Xiao ) 4 Human 15.980 48.926 0.619 0.000 0.608 0.731 27.180 0.000 30.295 0.176
45 Xiao Group (Xiao ) 1 Human 6.340 97.463 0.421 0.000 0.508 0.283 28.290 0.001 41.009 0.176
46 Bujnicki Group (Bujnicki ) 5 Server 166.290 88.244 0.478 0.000 0.518 0.487 25.700 0.005 42.169 0.117
47 Xiao Group (Xiao ) 2 Human 8.490 101.773 0.423 0.000 0.508 0.283 28.290 0.018 43.031 0.176
48 Xiao Group (Xiao ) 3 Human 5.960 106.916 0.423 0.000 0.508 0.283 28.290 0.189 45.206 0.176
49 Bujnicki Group (Bujnicki ) 2 Server 147.760 106.760 0.495 0.000 0.548 0.457 26.410 1.000 52.866 0.134
50 Dokholyan Group (Dokholyan ) 3 Server 139.910 108.331 0.492 0.149 0.531 0.457 26.080 1.000 53.252 0.144
51 Dokholyan Group (Dokholyan ) 2 Server 153.200 119.633 0.480 0.000 0.530 0.445 26.700 1.000 57.452 0.140
52 Dokholyan Group (Dokholyan ) 5 Server 125.290 120.705 0.495 0.000 0.538 0.469 28.450 1.000 59.809 0.145
53 Bujnicki Group (Bujnicki ) 3 Server 140.410 121.461 0.504 0.000 0.573 0.448 25.150 1.000 61.197 0.150
54 Bujnicki Group (Bujnicki ) 4 Server 133.590 129.029 0.510 0.000 0.568 0.476 26.470 1.000 65.869 0.174
55 Dokholyan Group (Dokholyan ) 1 Server 130.070 133.547 0.512 0.000 0.582 0.422 24.650 1.000 68.338 0.135
56 Bujnicki Group (Bujnicki ) 1 Server 145.940 143.496 0.484 0.000 0.547 0.440 25.920 1.000 69.382 0.142
57 Dokholyan Group (Dokholyan ) 4 Server 158.900 147.653 0.492 0.000 0.542 0.457 26.670 1.000 72.581 0.161
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 11.030 62.538 6.150 6.349
DI 27.333 55.133 19.433 26.017
INF all 0.510 0.383 0.779 0.566
INF nwc 0.000 0.265 0.581 0.451
INF stacking 0.573 0.538 0.718 0.630
INF wc 0.476 0.599 0.939 0.766
MCQ 22.040 22.176 24.085 23.010
P-Value 0.000 0.360 0.000 0.006
RMSD 20.701 32.740 15.014 18.179
TM-score 0.160 0.157 0.173 0.170

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD
Violin plot for TM-score