Completed Puzzles Puzzle PZ27tBox Results
Description
T-box riboswitch (Bacillus subtilis glyQS)
RNA sequence (5' to 3')
GUUGCAGUGAGAGAAAGAAGUACUUGCGUUUACCUCAUGAAAG CGACCUUAGGGCGGUGUAAGCUAAGGAUGAGCACGCAACGAAA GGCAUUCUUGAGCAAUUUUAAAAAAGAGGCUGGGAUUUUGUUC UCAGCAACUAGGGUGGAACCGCGGGAGAACUCUCGUCCCUA
Experimental structure(s)
iwj9Q1wkPJ7YW9tfC6loRzBmBwog9uaH-solutionPZ27tBox.pdb
References

S. Li, Z. Su, J. Lehmann, V. Stamatopoulou, N. Giarimoglou, F. E. Henderson, L. Fan, G. D. Pintille, K. Zhang, M. Chen, S. J. Ludtke, Y. X. Wang, C. Stathopoulos, W. Chiu and J. Zhang (2019) Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nature Structural & Molecular Biology, 26(12): 1094-1105

PDB ID:
6pom
Opening date:
21 Oct 2019, 23:24
Closing date (Human category):
11 Nov 2019, 23:24
Closing date (Webserver category):
23 Oct 2019, 23:24

Display:
Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
TM-score
Details
1 Das Group (Das ) 6 Server 6.970 14.884 0.765 0.684 0.707 0.933 17.950 0.000 11.381 0.159
2 Das Group (Das ) 2 Human 7.730 15.175 0.760 0.522 0.717 0.933 17.820 0.000 11.538 0.157
3 Das Group (Das ) 2 Server 7.730 15.175 0.760 0.522 0.717 0.933 17.820 0.000 11.538 0.157
4 Das Group (Das ) 5 Human 7.350 15.722 0.765 0.640 0.707 0.943 17.970 0.000 12.023 0.160
5 Das Group (Das ) 8 Server 7.350 15.722 0.765 0.640 0.707 0.943 17.970 0.000 12.023 0.160
6 Das Group (Das ) 8 Human 5.960 16.759 0.760 0.572 0.719 0.904 18.170 0.000 12.743 0.158
7 Das Group (Das ) 1 Server 5.960 16.759 0.760 0.572 0.719 0.904 18.170 0.000 12.743 0.158
8 Das Group (Das ) 9 Human 6.970 17.280 0.765 0.603 0.719 0.913 18.050 0.000 13.211 0.164
9 Das Group (Das ) 6 Human 6.340 17.704 0.765 0.640 0.714 0.923 18.080 0.000 13.535 0.159
10 Das Group (Das ) 9 Server 6.340 17.704 0.765 0.640 0.714 0.923 18.080 0.000 13.535 0.159
11 Chen Group (Chen ) 4 Human 5.070 18.679 0.733 0.503 0.670 0.943 25.110 0.000 13.697 0.184
12 Chen Group (Chen ) 2 Human 5.450 19.260 0.714 0.503 0.645 0.930 25.790 0.000 13.751 0.184
13 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Server 9.510 19.073 0.726 0.348 0.671 0.913 21.480 0.000 13.842 0.189
14 Chen Group (Chen ) 9 Human 5.320 18.126 0.766 0.533 0.704 0.966 24.070 0.000 13.883 0.156
15 Das Group (Das ) 7 Human 7.860 18.789 0.760 0.545 0.717 0.923 18.090 0.000 14.286 0.160
16 Das Group (Das ) 7 Server 7.860 18.789 0.760 0.545 0.717 0.923 18.090 0.000 14.286 0.160
17 Das Group (Das ) 1 Human 6.460 18.648 0.769 0.640 0.732 0.886 18.190 0.000 14.333 0.163
18 Das Group (Das ) 3 Server 6.460 18.648 0.769 0.640 0.732 0.886 18.190 0.000 14.333 0.163
19 Das Group (Das ) 3 Human 7.100 18.890 0.765 0.640 0.719 0.904 18.260 0.000 14.442 0.164
20 Das Group (Das ) 4 Server 7.100 18.890 0.765 0.640 0.719 0.904 18.260 0.000 14.442 0.164
21 Das Group (Das ) 10 Human 6.840 20.165 0.756 0.572 0.709 0.913 17.800 0.000 15.251 0.145
22 Chen Group (Chen ) 3 Human 3.040 21.771 0.712 0.503 0.632 0.943 24.380 0.000 15.496 0.194
23 Chen Group (Chen ) 8 Human 4.060 21.611 0.748 0.570 0.681 0.945 25.270 0.000 16.174 0.146
24 Chen Group (Chen ) 1 Human 5.070 23.843 0.686 0.402 0.605 0.943 25.000 0.000 16.355 0.144
25 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Server 11.280 23.077 0.715 0.492 0.636 0.933 22.780 0.000 16.490 0.175
26 Chen Group (Chen ) 5 Human 5.200 23.005 0.733 0.503 0.670 0.943 24.480 0.000 16.869 0.189
27 Das Group (Das ) 4 Human 7.230 21.958 0.773 0.640 0.726 0.923 18.170 0.000 16.971 0.170
28 Das Group (Das ) 5 Server 7.230 21.958 0.773 0.640 0.726 0.923 18.170 0.000 16.971 0.170
29 Das Group (Das ) 10 Server 6.340 22.699 0.767 0.684 0.717 0.913 18.280 0.000 17.402 0.160
30 Chen Group (Chen ) 10 Human 7.220 23.248 0.759 0.533 0.698 0.956 24.480 0.000 17.647 0.150
31 Chen Group (Chen ) 7 Human 3.800 24.385 0.743 0.570 0.665 0.956 23.950 0.000 18.122 0.177
32 Bujnicki Group (Bujnicki ) 1 Human 2.150 28.560 0.636 0.402 0.617 0.744 23.800 0.000 18.158 0.190
33 Bujnicki Group (Bujnicki ) 3 Human 3.170 28.972 0.635 0.456 0.627 0.698 23.810 0.000 18.393 0.196
34 Bujnicki Group (Bujnicki ) 2 Human 1.390 29.514 0.642 0.533 0.613 0.756 23.650 0.000 18.952 0.184
35 Bujnicki Group (Bujnicki ) 5 Human 3.930 31.064 0.627 0.456 0.604 0.729 24.100 0.000 19.468 0.198
36 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Server 11.030 26.590 0.733 0.452 0.668 0.933 23.170 0.000 19.479 0.166
37 Chen Group (Chen ) 6 Human 3.170 26.451 0.738 0.503 0.677 0.941 24.800 0.000 19.518 0.170
38 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 10.900 26.886 0.753 0.503 0.685 0.965 25.370 0.000 20.242 0.182
39 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 10.900 26.557 0.763 0.636 0.682 0.977 24.740 0.000 20.254 0.152
40 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Server 11.410 29.786 0.743 0.615 0.665 0.954 22.040 0.000 22.136 0.170
41 Bujnicki Group (Bujnicki ) 4 Human 0.760 35.730 0.629 0.456 0.603 0.747 23.680 0.000 22.489 0.176
42 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Server 9.510 32.131 0.714 0.492 0.638 0.933 21.740 0.000 22.945 0.162
43 Dokholyan Group (Dokholyan ) 2 Server 153.200 48.714 0.545 0.000 0.566 0.592 26.700 0.000 26.559 0.140
44 Xiao Group (Xiao ) 4 Human 15.980 44.791 0.596 0.000 0.564 0.768 27.180 0.000 26.696 0.176
45 Xiao Group (Xiao ) 5 Human 15.970 44.791 0.596 0.000 0.564 0.768 27.180 0.000 26.696 0.176
46 Bujnicki Group (Bujnicki ) 5 Server 166.290 52.051 0.524 0.000 0.526 0.659 25.700 0.000 27.274 0.117
47 Bujnicki Group (Bujnicki ) 3 Server 140.410 55.333 0.537 0.000 0.570 0.588 25.150 0.000 29.719 0.150
48 Dokholyan Group (Dokholyan ) 3 Server 139.910 58.984 0.534 0.174 0.538 0.589 26.080 0.000 31.492 0.144
49 Bujnicki Group (Bujnicki ) 2 Server 147.760 58.589 0.539 0.000 0.553 0.619 26.410 0.000 31.572 0.134
50 Bujnicki Group (Bujnicki ) 4 Server 133.590 61.802 0.550 0.000 0.573 0.627 26.470 0.015 34.018 0.174
51 Dokholyan Group (Dokholyan ) 1 Server 130.070 64.473 0.574 0.000 0.613 0.569 24.650 0.311 37.021 0.135
52 Dokholyan Group (Dokholyan ) 4 Server 158.900 74.382 0.529 0.000 0.542 0.595 26.670 0.794 39.384 0.161
53 Bujnicki Group (Bujnicki ) 1 Server 145.940 76.700 0.516 0.000 0.545 0.569 25.920 0.825 39.588 0.142
54 Dokholyan Group (Dokholyan ) 5 Server 125.290 76.052 0.534 - 0.534 0.614 28.450 0.935 40.632 0.145
55 Xiao Group (Xiao ) 1 Human 6.340 157.995 0.272 0.000 0.400 0.000 28.290 0.998 43.041 0.176
56 Xiao Group (Xiao ) 2 Human 8.490 157.995 0.272 0.000 0.400 0.000 28.290 0.998 43.041 0.176
57 Xiao Group (Xiao ) 3 Human 5.960 157.995 0.272 0.000 0.400 0.000 28.290 0.998 43.041 0.176
Metric Webserver category Human category
Median Mean Median Mean
Clashscore 11.030 62.538 6.150 6.349
DI 26.590 37.559 23.127 36.635
INF all 0.726 0.666 0.740 0.677
INF nwc 0.492 0.351 0.513 0.456
INF stacking 0.665 0.641 0.674 0.643
INF wc 0.904 0.795 0.923 0.806
MCQ 22.040 22.176 24.085 23.010
P-Value 0.000 0.115 0.000 0.094
RMSD 19.479 22.832 16.920 19.385
TM-score 0.160 0.157 0.173 0.170

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD
Violin plot for TM-score