Completed Puzzles Puzzle PZ4 Results
Description
SAM-I riboswitch aptamer.
RNA sequence (5' to 3')
GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGAUGAAACCCGGCAACCACUAGU CUAGCGUCAGCUUCGGCUGACGCUAGGCUAGUGGUGCCAAUUCCUGCAGCGGAA ACGUUGAAAGAUGAGCCA
Experimental structure(s)
K8ukgVEfzf9sbZiXpdJ31yOV4x6xJq3X-solutionPZ4.pdb xyIb0Clmi9ZU1wwpFArmK5dGBZS8yX8N-solutionPZ4_1.pdb
References

N. J. Baird, J. Zhang, T. Hamma and A. R. Ferre-DAmare (2012). YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops. RNA 18: 759-770.

PDB ID:
3v7e
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Chen Group (Chen ) 2 Human 2.220 3.472 0.938 0.667 0.935 0.989 15.810 0.000 3.257
2 Chen Group (Chen ) 9 Human 1.980 3.456 0.943 0.756 0.934 0.989 15.690 0.000 3.259
3 Chen Group (Chen ) 1 Human 1.970 3.490 0.935 0.707 0.926 0.989 16.510 0.000 3.262
4 Chen Group (Chen ) 10 Human 1.970 3.471 0.940 0.707 0.935 0.989 15.910 0.000 3.264
5 Chen Group (Chen ) 8 Human 3.460 3.452 0.947 0.707 0.944 0.989 15.930 0.000 3.269
6 Chen Group (Chen ) 7 Human 3.210 3.495 0.937 0.756 0.925 0.989 15.840 0.000 3.275
7 Chen Group (Chen ) 5 Human 2.720 3.477 0.943 0.756 0.934 0.989 15.880 0.000 3.279
8 Chen Group (Chen ) 4 Human 3.450 3.476 0.944 0.707 0.940 0.989 15.670 0.000 3.281
9 Chen Group (Chen ) 3 Human 2.220 3.467 0.947 0.756 0.940 0.989 15.940 0.000 3.282
10 Chen Group (Chen ) 6 Human 2.220 3.481 0.943 0.756 0.934 0.989 15.950 0.000 3.283
11 Bujnicki Group (Bujnicki ) 1 Human 20.410 4.379 0.912 0.671 0.893 0.979 18.350 0.000 3.994
12 Bujnicki Group (Bujnicki ) 5 Human 20.410 4.396 0.909 0.671 0.888 0.979 18.620 0.000 3.994
13 Bujnicki Group (Bujnicki ) 2 Human 24.340 4.427 0.903 0.671 0.880 0.979 18.400 0.000 3.997
14 Bujnicki Group (Bujnicki ) 4 Human 25.080 4.427 0.903 0.671 0.880 0.979 18.400 0.000 3.997
15 Bujnicki Group (Bujnicki ) 3 Human 21.640 4.402 0.909 0.750 0.885 0.979 18.450 0.000 4.002
16 Santalucia Group (Santalucia ) 1 Human 33.920 4.563 0.882 0.567 0.852 0.989 19.960 0.000 4.023
17 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 18.690 4.857 0.842 0.289 0.821 0.934 23.010 0.000 4.091
18 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 19.920 4.909 0.860 0.577 0.826 0.957 23.020 0.000 4.222
19 Major Group (Major ) 1 Human 0.490 4.804 0.902 0.707 0.881 0.979 24.390 0.000 4.331
20 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Human 69.110 6.975 0.632 0.224 0.682 0.572 32.470 0.000 4.405
21 Das Group (Das ) 1 Human 8.620 5.038 0.893 0.577 0.875 0.979 15.710 0.000 4.498
22 Das Group (Das ) 2 Human 8.860 5.023 0.896 0.577 0.879 0.979 15.720 0.000 4.499
23 Das Group (Das ) 3 Human 8.860 5.023 0.896 0.577 0.879 0.979 15.710 0.000 4.499
24 Das Group (Das ) 4 Human 8.860 5.023 0.896 0.577 0.879 0.979 15.710 0.000 4.499
25 Das Group (Das ) 5 Human 8.860 5.023 0.896 0.577 0.879 0.979 15.720 0.000 4.499
26 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 17.220 5.603 0.840 0.577 0.801 0.945 24.710 0.000 4.705
27 Dokholyan Group (Dokholyan ) 1 Human 13.520 5.675 0.906 0.756 0.878 0.989 17.730 0.000 5.139
28 Dokholyan Group (Dokholyan ) 2 Human 13.520 5.675 0.906 0.756 0.878 0.989 17.730 0.000 5.139
29 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 70.830 9.066 0.699 0.250 0.723 0.697 33.600 0.000 6.339
30 Mikolajczak Group (Mikolajczak ) 1 Human 29.290 17.774 0.720 0.289 0.749 0.739 23.450 0.000 12.801
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 8.860 15.596
DI - - 4.495 5.060
INF all - - 0.905 0.887
INF nwc - - 0.671 0.620
INF stacking - - 0.880 0.875
INF wc - - 0.979 0.949
MCQ - - 17.120 19.000
P-Value - - 0.000 0.000
RMSD - - 4.012 4.346

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD