Completed Puzzles Puzzle PZ5 Results
Description
group I intron.
RNA sequence (5' to 3')
CAUCCGGUAUCCCAAGACAAUCUCGGGUUGGGUUGGGAAGUAUCAUGGCUAAUC ACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGACGAU CCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCAGGUGUGU CCAAUGAACAGUCGUUCCGAAAGGAAG
Experimental structure(s)
MtZj2AtNXrcuTBc7YnTfEpNGFydtWVTh-solutionPZ5.pdb mcBKQzf7lvVDlYYfLPJGr7iHqAlyiTaN-solutionPZ5_1.pdb W9V5VDSp9Z8sFtHZvmwC52uEcT2HlL82-solutionPZ5_2.pdb
References

M. Meyer, H. Nielsen, V. Oliéric, P. Roblin, S. D. Johansen, E. Westhof and B. Masquida (2014). Speciation of a group I intron into a lariat capping ribozyme. PNAS.111(21): 7659-64.

PDB ID:
4p9r
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Das Group (Das ) 2 Human 9.930 12.019 0.761 0.334 0.751 0.906 24.150 0.000 9.152
2 Das Group (Das ) 1 Human 11.590 13.148 0.757 0.256 0.751 0.919 24.490 0.000 9.948
3 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 15.900 23.964 0.700 0.000 0.661 0.896 24.140 0.000 16.778
4 Dokholyan Group (Dokholyan ) 2 Human 11.420 29.143 0.683 - 0.656 0.837 24.430 0.000 19.899
5 Dokholyan Group (Dokholyan ) 4 Human 11.420 29.143 0.683 - 0.656 0.837 24.430 0.000 19.899
6 Bujnicki Group (Bujnicki ) 2 Human 2.320 28.094 0.739 0.000 0.735 0.862 21.880 0.000 20.765
7 Dokholyan Group (Dokholyan ) 6 Human 14.400 28.646 0.727 0.000 0.692 0.912 24.210 0.000 20.820
8 Dokholyan Group (Dokholyan ) 7 Human 11.090 30.612 0.700 0.000 0.663 0.905 23.820 0.000 21.443
9 Bujnicki Group (Bujnicki ) 4 Human 1.320 32.797 0.678 0.000 0.682 0.789 20.220 0.002 22.244
10 Bujnicki Group (Bujnicki ) 3 Human 6.290 36.990 0.605 0.000 0.620 0.717 23.410 0.002 22.370
11 Dokholyan Group (Dokholyan ) 5 Human 11.090 32.553 0.707 - 0.679 0.866 23.050 0.006 23.014
12 Dokholyan Group (Dokholyan ) 3 Human 10.760 32.635 0.726 0.000 0.712 0.878 22.970 0.016 23.685
13 Bujnicki Group (Bujnicki ) 5 Human 0.990 34.150 0.697 0.000 0.680 0.860 21.510 0.019 23.811
14 Dokholyan Group (Dokholyan ) 8 Human 12.090 33.842 0.709 0.000 0.673 0.889 24.040 0.024 24.008
15 Bujnicki Group (Bujnicki ) 1 Human 1.490 36.689 0.675 0.000 0.691 0.789 21.980 0.061 24.777
16 Chen Group (Chen ) 2 Human 8.940 36.329 0.707 0.000 0.732 0.804 25.300 0.147 25.673
17 Chen Group (Chen ) 7 Human 0.000 39.497 0.665 0.000 0.689 0.759 26.320 0.234 26.257
18 Dokholyan Group (Dokholyan ) 1 Human 9.930 38.027 0.715 - 0.703 0.841 23.230 0.419 27.195
19 Chen Group (Chen ) 1 Human 5.460 38.902 0.700 0.000 0.714 0.812 24.090 0.428 27.236
20 Chen Group (Chen ) 3 Human 11.590 41.689 0.689 0.000 0.739 0.714 24.690 0.739 28.714
21 Chen Group (Chen ) 5 Human 14.070 44.063 0.712 0.000 0.728 0.810 23.170 0.983 31.393
22 Chen Group (Chen ) 4 Human 8.940 43.503 0.725 0.000 0.741 0.832 25.410 0.986 31.522
23 Chen Group (Chen ) 6 Human 0.330 44.069 0.716 0.000 0.725 0.832 26.080 0.987 31.551
24 Xiao Group (Xiao ) 2 Human 0.170 48.542 0.670 0.198 0.638 0.831 33.880 0.997 32.526
25 Xiao Group (Xiao ) 1 Human 0.000 52.904 0.691 0.205 0.660 0.857 33.180 1.000 36.543
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 9.930 7.661
DI - - 34.150 34.478
INF all - - 0.700 0.701
INF nwc - - 0.000 0.040
INF stacking - - 0.691 0.695
INF wc - - 0.837 0.838
MCQ - - 24.140 24.563
P-Value - - 0.019 0.282
RMSD - - 23.811 24.049

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD