Completed Puzzles Puzzle PZ7 Results
Description
Varkud satellite ribozyme.
RNA sequence (5' to 3')
GCGCUGUGUCGCAAUCUGCGAAGGGCGUCGUCGGCCCGAGCGGUAGUAAGCAGG GAACUCACCUCCAAUGAAACACAUUGUCGUAGCAGUUGACUACUGUUAUGUGAU UGGUAGAGGCUAAGUGACGGUAUUGGCGUAAGCCAAUACCGCGGCACAGCACAA GCCCGCUUGCGAGAUUACAGCGC
Experimental structure(s)
c1RXpnWgqzW9dxaEK6YePSuqdsJ7zzc4-solutionPZ7.pdb yS8qeVODRdDJoy14UHhOef22bEpwMiNp-solutionPZ7_1.pdb
References

N. B. Suslov, S. DasGupta, H. Huang, J. R. Fuller, D. M. J. Lilley, P. A. Rice and J. A. Piccirilli. (2015). Crystal structure of the Varkud satellite ribozyme. Nature Chemical Biology 11: 840–846.

PDB ID:
4r4v
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Das Group (Das ) 1 Human 10.680 27.245 0.748 0.105 0.726 0.895 25.400 0.000 20.370
2 Das Group (Das ) 2 Human 7.900 31.732 0.725 0.101 0.713 0.852 25.130 0.000 23.020
3 Chen Group (Chen ) 5 Human 61.900 30.516 0.763 0.158 0.742 0.877 19.620 0.000 23.290
4 Das Group (Das ) 3 Human 8.410 33.697 0.715 0.098 0.707 0.839 25.720 0.000 24.095
5 Das Group (Das ) 5 Human 7.400 32.713 0.740 0.154 0.703 0.880 25.710 0.000 24.205
6 Bujnicki Group (Bujnicki ) 4 Human 1.430 33.248 0.736 0.000 0.717 0.861 22.250 0.000 24.456
7 Bujnicki Group (Bujnicki ) 5 Human 2.270 33.247 0.736 0.000 0.717 0.861 22.250 0.000 24.456
8 Das Group (Das ) 6 Human 10.590 33.605 0.732 0.098 0.726 0.858 26.870 0.000 24.611
9 Das Group (Das ) 7 Human 13.460 35.244 0.706 0.114 0.686 0.836 26.690 0.000 24.892
10 Das Group (Das ) 4 Human 9.580 36.130 0.692 0.085 0.683 0.842 26.540 0.000 25.000
11 Bujnicki Group (Bujnicki ) 3 Human 1.760 35.033 0.739 0.000 0.710 0.861 22.940 0.000 25.885
12 Bujnicki Group (Bujnicki ) 6 Human 0.500 35.254 0.734 0.000 0.704 0.861 23.480 0.000 25.889
13 Ding Group (Ding ) 9 Human 11.080 40.255 0.649 - 0.630 0.726 24.590 0.000 26.141
14 Bujnicki Group (Bujnicki ) 7 Human 1.010 36.246 0.730 0.000 0.708 0.858 22.890 0.000 26.450
15 Das Group (Das ) 8 Human 7.730 36.311 0.730 0.000 0.743 0.849 24.260 0.000 26.511
16 Major Group (Major ) 3 Human 56.300 39.310 0.678 0.000 0.660 0.803 41.540 0.000 26.661
17 Ding Group (Ding ) 8 Human 13.770 40.542 0.659 0.000 0.638 0.748 24.170 0.000 26.736
18 Major Group (Major ) 9 Human 67.130 40.163 0.675 0.000 0.652 0.797 41.330 0.000 27.118
19 Major Group (Major ) 8 Human 51.520 40.217 0.675 0.000 0.660 0.787 41.630 0.000 27.147
20 Major Group (Major ) 4 Human 30.710 40.338 0.675 0.000 0.650 0.803 36.780 0.000 27.228
21 Major Group (Major ) 6 Human 46.960 40.203 0.683 0.000 0.667 0.793 38.830 0.000 27.474
22 Chen Group (Chen ) 4 Human 65.650 37.301 0.739 0.218 0.712 0.846 20.220 0.000 27.571
23 Major Group (Major ) 2 Human 51.940 40.628 0.687 0.000 0.667 0.803 39.760 0.000 27.906
24 Major Group (Major ) 5 Human 38.470 40.891 0.687 0.000 0.672 0.793 37.310 0.000 28.087
25 Major Group (Major ) 7 Human 35.010 40.898 0.687 0.000 0.672 0.793 37.280 0.000 28.092
26 Chen Group (Chen ) 1 Human 1.520 60.450 0.465 0.000 0.495 0.502 37.270 0.000 28.115
27 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 5 Human 9.910 40.069 0.708 0.154 0.672 0.842 27.370 0.000 28.357
28 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 14.950 43.655 0.653 0.000 0.607 0.810 28.640 0.000 28.508
29 Chen Group (Chen ) 7 Human 71.320 38.856 0.737 0.169 0.717 0.839 21.000 0.000 28.651
30 Major Group (Major ) 1 Human 33.490 42.571 0.673 0.000 0.647 0.801 40.470 0.000 28.659
31 Ding Group (Ding ) 1 Human 14.610 41.871 0.687 0.000 0.678 0.758 23.990 0.000 28.770
32 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 14.450 42.190 0.682 0.143 0.651 0.810 29.520 0.000 28.782
33 Chen Group (Chen ) 6 Human 60.760 39.150 0.739 0.154 0.723 0.839 21.000 0.000 28.950
34 Ding Group (Ding ) 6 Human 10.920 44.066 0.658 - 0.628 0.758 24.760 0.000 29.007
35 Ding Group (Ding ) 5 Human 11.760 45.004 0.651 0.000 0.631 0.748 25.180 0.000 29.307
36 Ding Group (Ding ) 7 Human 12.260 43.966 0.670 0.000 0.649 0.764 25.540 0.000 29.464
37 Dokholyan Group (Dokholyan ) 1 Human 7.050 44.004 0.673 0.000 0.605 0.869 26.710 0.000 29.617
38 Chen Group (Chen ) 8 Human 55.320 40.167 0.740 0.267 0.716 0.830 19.960 0.000 29.720
39 Chen Group (Chen ) 3 Human 53.520 40.748 0.729 0.189 0.700 0.846 20.220 0.000 29.724
40 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 4 Human 14.620 46.052 0.652 0.000 0.630 0.777 27.150 0.000 30.027
41 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 3 Human 17.640 45.113 0.677 0.000 0.643 0.810 27.450 0.000 30.562
42 Major Group (Major ) 10 Human 47.050 45.897 0.680 0.000 0.660 0.803 38.940 0.000 31.207
43 Ding Group (Ding ) 3 Human 15.450 48.890 0.645 0.000 0.627 0.727 24.400 0.000 31.554
44 Chen Group (Chen ) 10 Human 47.470 43.690 0.723 0.218 0.698 0.820 20.590 0.000 31.567
45 Ding Group (Ding ) 4 Human 14.280 48.817 0.647 0.000 0.625 0.754 23.670 0.000 31.596
46 Ding Group (Ding ) 2 Human 10.920 48.771 0.663 0.000 0.641 0.754 24.790 0.000 32.341
47 Chen Group (Chen ) 9 Human 64.150 45.483 0.720 0.189 0.693 0.826 19.890 0.000 32.739
48 Chen Group (Chen ) 2 Human 59.790 46.775 0.728 0.218 0.703 0.826 21.340 0.000 34.039
49 Ding Group (Ding ) 10 Human 11.250 57.034 0.634 0.000 0.615 0.721 23.790 0.002 36.139
50 Dokholyan Group (Dokholyan ) 2 Human 8.730 64.923 0.562 0.000 0.607 0.521 25.900 0.003 36.471
51 Bujnicki Group (Bujnicki ) 1 Human 1.850 65.995 0.635 0.000 0.683 0.598 22.310 0.602 41.938
52 Bujnicki Group (Bujnicki ) 2 Human 2.440 96.727 0.627 0.000 0.668 0.611 22.510 1.000 60.678
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 14.025 25.012
DI - - 40.585 42.729
INF all - - 0.687 0.688
INF nwc - - 0.000 0.054
INF stacking - - 0.672 0.671
INF wc - - 0.810 0.794
MCQ - - 25.155 27.261
P-Value - - 0.000 0.031
RMSD - - 28.236 29.034

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD