Completed Puzzles Puzzle PZ8 Results
Description
SAM riboswitch.
RNA sequence (5' to 3')
GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACA CCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGUCCGU
Experimental structure(s)
BOnOPvZRe6IwvI7dVhQeZeeDil83Dxwk-solutionPZ8.pdb
References

J. J. Trausch, Z. Xu, A. L. Edwards, F. E. Reyes, P. E. Ross, R. Knight and R.T. Batey (2014) Structural basis for diversity in the SAM clan of riboswitches. PNAS.111(18): 6624-9.

PDB ID:
4l81
Opening date:
19 Oct 2020, 23:24
Closing date (Human category):
19 Oct 2020, 23:24

Hide or show column:

# Group (User) Model(s) Category Clashscore
DI
INF all
INF nwc
INF stacking
INF wc
MCQ
P-Value
RMSD
Details
1 Das Group (Das ) 3 Human 13.800 5.651 0.850 0.577 0.816 0.985 17.700 0.000 4.801
2 Das Group (Das ) 1 Human 14.440 7.519 0.847 0.544 0.824 0.970 16.630 0.000 6.372
3 Bujnicki Group (Bujnicki ) 7 Human 0.960 8.934 0.751 0.289 0.711 0.906 20.450 0.000 6.711
4 Bujnicki Group (Bujnicki ) 9 Human 4.800 9.074 0.751 0.500 0.735 0.839 18.020 0.000 6.816
5 Das Group (Das ) 2 Human 12.830 12.445 0.856 0.544 0.832 0.985 16.750 0.000 10.654
6 Das Group (Das ) 6 Human 5.440 13.030 0.827 0.577 0.795 0.954 20.240 0.000 10.772
7 Das Group (Das ) 4 Human 7.380 13.042 0.827 0.516 0.800 0.969 19.060 0.000 10.781
8 Bujnicki Group (Bujnicki ) 10 Human 17.610 15.104 0.715 0.408 0.680 0.844 20.540 0.000 10.799
9 Das Group (Das ) 5 Human 7.700 13.335 0.811 0.492 0.786 0.954 18.900 0.000 10.810
10 Bujnicki Group (Bujnicki ) 5 Human 14.090 14.089 0.783 0.612 0.750 0.884 16.440 0.000 11.030
11 Chen Group (Chen ) 3 Human 3.200 14.816 0.762 0.289 0.724 0.906 22.750 0.000 11.284
12 Chen Group (Chen ) 9 Human 2.580 17.396 0.650 0.408 0.595 0.835 31.040 0.000 11.299
13 Bujnicki Group (Bujnicki ) 3 Human 19.530 14.424 0.784 0.617 0.747 0.906 17.230 0.000 11.311
14 Ding Group (Ding ) 3 Human 14.410 15.930 0.711 0.000 0.658 0.936 21.360 0.000 11.329
15 Ding Group (Ding ) 10 Human 12.490 15.085 0.751 - 0.687 0.952 19.970 0.000 11.333
16 Bujnicki Group (Bujnicki ) 8 Human 5.760 14.563 0.788 0.612 0.757 0.892 17.920 0.000 11.479
17 Chen Group (Chen ) 5 Human 1.920 15.754 0.741 0.236 0.688 0.923 21.860 0.000 11.670
18 Chen Group (Chen ) 6 Human 1.290 17.023 0.691 0.500 0.623 0.871 31.040 0.000 11.764
19 Bujnicki Group (Bujnicki ) 6 Human 11.850 15.481 0.761 0.500 0.730 0.879 16.300 0.000 11.782
20 Bujnicki Group (Bujnicki ) 2 Human 12.810 14.601 0.811 0.471 0.784 0.923 17.150 0.000 11.840
21 Ding Group (Ding ) 1 Human 14.090 17.395 0.695 - 0.616 0.921 21.780 0.000 12.090
22 Chen Group (Chen ) 10 Human 1.280 16.320 0.745 0.236 0.703 0.906 23.260 0.000 12.151
23 Bujnicki Group (Bujnicki ) 4 Human 16.650 14.744 0.825 0.548 0.797 0.938 15.900 0.000 12.166
24 Bujnicki Group (Bujnicki ) 1 Human 7.680 15.667 0.783 0.730 0.737 0.896 16.910 0.000 12.266
25 Ding Group (Ding ) 5 Human 12.170 16.656 0.744 0.000 0.699 0.935 21.000 0.000 12.389
26 Ding Group (Ding ) 7 Human 11.210 16.938 0.737 - 0.660 0.968 19.870 0.000 12.484
27 Chen Group (Chen ) 2 Human 0.640 17.045 0.751 0.236 0.719 0.892 21.930 0.000 12.792
28 Chen Group (Chen ) 7 Human 24.020 18.399 0.696 0.236 0.651 0.857 23.830 0.000 12.799
29 Chen Group (Chen ) 4 Human 1.280 17.903 0.720 0.236 0.664 0.906 23.010 0.000 12.882
30 Chen Group (Chen ) 1 Human 11.850 16.509 0.792 0.471 0.753 0.923 23.850 0.000 13.079
31 Ding Group (Ding ) 2 Human 17.610 18.418 0.733 0.000 0.687 0.921 22.410 0.000 13.500
32 Ding Group (Ding ) 6 Human 7.360 18.314 0.739 0.000 0.685 0.936 20.870 0.000 13.531
33 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 1 Human 10.250 17.829 0.778 0.612 0.733 0.906 21.750 0.000 13.876
34 Szachniuk Group (formerly: Adamiak Group) (Adamiak ) 2 Human 11.210 19.177 0.753 0.548 0.700 0.906 21.910 0.000 14.432
35 Ding Group (Ding ) 8 Human 13.770 21.191 0.707 0.000 0.652 0.921 20.560 0.000 14.986
36 Ding Group (Ding ) 4 Human 10.890 19.812 0.766 0.000 0.723 0.953 20.540 0.000 15.174
37 Chen Group (Chen ) 8 Human 2.260 23.470 0.674 0.365 0.625 0.849 28.700 0.000 15.808
38 Ding Group (Ding ) 9 Human 13.450 22.992 0.705 0.000 0.655 0.954 21.070 0.000 16.220
39 Dokholyan Group (Dokholyan ) 2 Human 11.530 34.342 0.542 0.000 0.492 0.699 24.930 0.000 18.620
40 Dokholyan Group (Dokholyan ) 1 Human 7.360 39.172 0.605 0.289 0.596 0.667 23.380 0.002 23.687
41 Dokholyan Group (Dokholyan ) 3 Human 6.400 43.627 0.567 - 0.531 0.689 23.160 0.011 24.752
42 Dokholyan Group (Dokholyan ) 4 Human 9.610 80.559 0.388 0.000 0.465 0.290 24.300 0.910 31.294
Metric Webserver category Human category
Median Mean Median Mean
Clashscore - - 11.050 9.701
DI - - 16.415 18.899
INF all - - 0.751 0.736
INF nwc - - 0.327 0.314
INF stacking - - 0.702 0.697
INF wc - - 0.906 0.884
MCQ - - 20.935 21.102
P-Value - - 0.000 0.022
RMSD - - 12.121 12.991

Result visualization for different evaluation measures

Violin plot for Clashscore
Violin plot for DI
Violin plot for INF all
Violin plot for INF nwc
Violin plot for INF stacking
Violin plot for INF wc
Violin plot for MCQ
Violin plot for P-Value
Violin plot for RMSD